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The map label for this gene is ycfH [C]

Identifier: 73541131

GI number: 73541131

Start: 1551781

End: 1552578

Strand: Direct

Name: ycfH [C]

Synonym: Reut_A1437

Alternate gene names: 73541131

Gene position: 1551781-1552578 (Clockwise)

Preceding gene: 73541130

Following gene: 73541132

Centisome position: 40.77

GC content: 63.03

Gene sequence:

>798_bases
ATGAATTTTGTAGATTCGCATTGCCATATCGATTTCCCCGACCTGGCCGCCCGGCTACCTGAACTGCTGGAGAATATGCG
CGCCAACCAGGTGTCGCATGCGCTCTGCATCTCGGTGACGCTCGAAGACTTTCCACGCGTGCTCGCGCTGGCCGAGCAGC
ATCCGAACCTGTACGCGTCGGTTGGTGTCCACCCGGACTACGAGGAGGGCGAAGAGCCCACGCTGGAACGCCTGCTGGAG
CTCTCCGCTCACCCGCGCGTGGTTGGCACTGGCGAAACCGGCCTGGACTACTACCGGCTGAATGGACGCAGCATCGCCGA
CATGGAGTGGCAACGCGAGCGTTTCCGCACCCATATCCGCGCCGCGCGCCAGACCGGCAAACCGCTGATCATCCATACCC
GCTCATCGGCCGACGACACGCTGCGCGTGATGCGCGAGGAAAACGCGGGCGAGGCCGGCGGCGTGATGCATTGCTTCACG
GAGACCTGGGACGTCGCGAAACAGGCGCTGGACGAGGGATTCCACATCTCGTTCTCGGGCATCGTCACCTTCAAGAGCGC
GGCGGACCTGCAGGAAACCGCGCGCAAGGTGCCGCTGGACCGCATGCTGATCGAGACCGATTCGCCGTACCTGGCGCCCG
TGCCGTACCGCGGCAAGACCAACGAACCAGCCTGGGTGCGCCACGTGGGCGAGTTCATCGCCAAGCTGCGCGGTCTGCCG
GTGGAGCAGATTGCCGAACAGACGACTGACAATTTCTTCAAGCTTTTCAAGCACATCGACAGGGAAGCCCATGTTTGA

Upstream 100 bases:

>100_bases
CCGTGCCGTCGAGGAGATCCTGGGCAAGCAACTGGAATCCGGCCGGCCCACGCAAACCTTGTGAAATACAAGAGGTTTGC
ATCGTAACTCATTGTTTATA

Downstream 100 bases:

>100_bases
CCTGAAATCCATCCGCAGCCTGACGGGCGCTGTACTGCTCGGCTGCGCGGCGCTGGTCTGGGCCGCGCCGGTCGACGATA
TGCGCAAGGCCGTGGAATTC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MNFVDSHCHIDFPDLAARLPELLENMRANQVSHALCISVTLEDFPRVLALAEQHPNLYASVGVHPDYEEGEEPTLERLLE
LSAHPRVVGTGETGLDYYRLNGRSIADMEWQRERFRTHIRAARQTGKPLIIHTRSSADDTLRVMREENAGEAGGVMHCFT
ETWDVAKQALDEGFHISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPYRGKTNEPAWVRHVGEFIAKLRGLP
VEQIAEQTTDNFFKLFKHIDREAHV

Sequences:

>Translated_265_residues
MNFVDSHCHIDFPDLAARLPELLENMRANQVSHALCISVTLEDFPRVLALAEQHPNLYASVGVHPDYEEGEEPTLERLLE
LSAHPRVVGTGETGLDYYRLNGRSIADMEWQRERFRTHIRAARQTGKPLIIHTRSSADDTLRVMREENAGEAGGVMHCFT
ETWDVAKQALDEGFHISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPYRGKTNEPAWVRHVGEFIAKLRGLP
VEQIAEQTTDNFFKLFKHIDREAHV
>Mature_265_residues
MNFVDSHCHIDFPDLAARLPELLENMRANQVSHALCISVTLEDFPRVLALAEQHPNLYASVGVHPDYEEGEEPTLERLLE
LSAHPRVVGTGETGLDYYRLNGRSIADMEWQRERFRTHIRAARQTGKPLIIHTRSSADDTLRVMREENAGEAGGVMHCFT
ETWDVAKQALDEGFHISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPYRGKTNEPAWVRHVGEFIAKLRGLP
VEQIAEQTTDNFFKLFKHIDREAHV

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=27.3062730627306, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=27.3062730627306, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=27.536231884058, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061614, Length=264, Percent_Identity=27.2727272727273, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI225903424, Length=271, Percent_Identity=27.3062730627306, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI225903439, Length=246, Percent_Identity=26.4227642276423, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI14042943, Length=246, Percent_Identity=26.4227642276423, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1787342, Length=263, Percent_Identity=46.7680608365019, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=29.2307692307692, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI48994985, Length=232, Percent_Identity=30.6034482758621, Blast_Score=105, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.8169014084507, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17565396, Length=307, Percent_Identity=28.6644951140065, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=26.4150943396226, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17543026, Length=298, Percent_Identity=25.8389261744966, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI221330018, Length=270, Percent_Identity=28.1481481481481, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24586117, Length=270, Percent_Identity=28.1481481481481, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24648690, Length=272, Percent_Identity=27.5735294117647, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30069; Mature: 30069

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFVDSHCHIDFPDLAARLPELLENMRANQVSHALCISVTLEDFPRVLALAEQHPNLYAS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCCEEEE
VGVHPDYEEGEEPTLERLLELSAHPRVVGTGETGLDYYRLNGRSIADMEWQRERFRTHIR
ECCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCEEEEECCCEECHHHHHHHHHHHHHH
AARQTGKPLIIHTRSSADDTLRVMREENAGEAGGVMHCFTETWDVAKQALDEGFHISFSG
HHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
IVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPYRGKTNEPAWVRHVGEFIAKLRGLP
EEEECCHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
VEQIAEQTTDNFFKLFKHIDREAHV
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNFVDSHCHIDFPDLAARLPELLENMRANQVSHALCISVTLEDFPRVLALAEQHPNLYAS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCCEEEE
VGVHPDYEEGEEPTLERLLELSAHPRVVGTGETGLDYYRLNGRSIADMEWQRERFRTHIR
ECCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCEEEEECCCEECHHHHHHHHHHHHHH
AARQTGKPLIIHTRSSADDTLRVMREENAGEAGGVMHCFTETWDVAKQALDEGFHISFSG
HHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
IVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPYRGKTNEPAWVRHVGEFIAKLRGLP
EEEECCHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
VEQIAEQTTDNFFKLFKHIDREAHV
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]