| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
Click here to switch to the map view.
The map label for this gene is fadB [H]
Identifier: 73541099
GI number: 73541099
Start: 1520134
End: 1522215
Strand: Direct
Name: fadB [H]
Synonym: Reut_A1405
Alternate gene names: 73541099
Gene position: 1520134-1522215 (Clockwise)
Preceding gene: 73541097
Following gene: 73541100
Centisome position: 39.93
GC content: 63.5
Gene sequence:
>2082_bases ATGACAGCGCAGTATCAGGTTCAGGACGGCGTAGCCGTCATCACGCTCGACAATCCTCCTGTCAACGGCCTGGGTCACAG CACCCGGCTTGGCATCGTCGATGGCATGACCCGTGCGCTGGACGATGCGGCCGTCAAGGCCATCGTCATCACCGGCGCCG GCAAGGCATTCTCGGGCGGCGCCGATATCCGCGAATTCAATACGCCCAAGGCCACGCAGGAACCGACGCTGCATTCGGTG ATCCGCGTGATCGAGGGTTCCTCCAAGCCGGTGGTGGCTGCAGTCCACTCGGTGGCAATGGGCGGTGGCCTGGAACTGGC CCTGGGCTGTAACTACCGCGTGGCTTCGAAGGGTGCGCAGATCGCGCTGCCGGAAGTCAAGCTGGGCCTGCTGCCCGGCG CCGGCGGCACGCAGCGCCTGCCGCGCGTGATCGGCCTGGAAGCGGCTGCCAACATGATCGTGTCGGGCACCGCCGTGCCG TCCGAGAAGTTCGCCGGCACCAAACTGTTCGATGAAATCGTCGATGGCGATGTCCTGCCCGCCGCGGTCAAGTTCGCGCA AAACGTCGCGGCTGCGCCCGGCCCGTACCCGAAGGTGCGCGACCTGAAGGTCCGTCACGAGAACCCGGAAGGCTTCCTCG GCTTTGCCAAGACCACCGTTGGCGCCATGGCCAAAAACTTCCCGGCGCCGCTGAAGTGCCTGGAAGCCGTGGCTGGCTCG CTCAAGCCGTTCGAGCAAGGCCTGAAGGAAGAGCGCGATGGCTTCCTGTACCTGGTGACCACGCCGGAATCGCGCGCGCT GCGCCATGCGTTCTTCGGTGAGCGCGCCGCCAGCAAGATCCCGGACGTGCCGTCGGACACGCCACTCCGCAAGATCGAAA AGATCGCCGTGATCGGCGCCGGCACCATGGGTGGCGGCATCAGCATGAACTTCCTGAACGCCGGCATCCCGGTCACGATC CTGGAAACCAAGCAGGAAGCGCTGGATCGCGGCATTGGCATCATCCGCAAGAACTACGAGAACAGCGCCAAGAAGGGCAA GCTCACGCAGGAGAAGGTCGAGCAGCGCATGGGCCTGCTGTCGACCACGCTCTCCTATGACGACATCAAGGACGCGGACA TGGTCATCGAGGCCGTGTTCGAAGAAATGGGCGTCAAGGAAATTGTGTTCAAGAAGCTGGACGAAGTGATGAAGCAAGGG GCGATCCTGGCTTCGAACACCTCGACGCTCGACGTGGACAAGATCGCCTCGTTCACCAAGCGTCCGCAGGACGTGGTCGG CATGCACTTCTTCAGCCCGGCCAACGTGATGAAGCTGCTGGAAGTCGTGCGCGGCGCGAAGACCGGCAAGGACGTGCTGG CCACCGTGATGGCGATCGGCAAGAAGATCAAGAAGACCGCTGTGGTGTCGGGCGTGTGCGACGGCTTTATCGGCAACCGC ATGATCGAGCAGTACAGCCGCCAGGCCGGCTACCTGCTGGACGAAGGCGCGCTGCCCGAGCAGGTCGACCGTGCTATCGA AAAGTTCGGTTTCGCCATGGGCCCGTTCCGCATGGGCGACCTGGCCGGCAACGACATCGGCTGGGCGATCCGCAAGCGCC GCGCGGTGGACAAGCCTGACATCCAGTACAGCAAGACCGCTGACCTGCTGTGCGAAATGGGCCGCTATGGCCAGAAGACC GGCGCGGGCTGGTACGACTACAAGGCGGGCGACCGCAAGCCGTACCCGAACCAGCAGGTCAACGACATGATAGTGCAGCA CTCCAAGGACCTTGGCATTACGCGCCGCAAGATTTCCGACGAGGAGATCGTCGAGCGCCTGGTGTTCGCGCTGGTCAACG AAGGCGCGAAGATCCTGGAAGAAGGCATTGCTTCGAAGGCCTCGGATATCGATATGGTGTACCTGACCGGCTACGGCTTC CCGCTGTTCCGCGGCGGCCCGATGCTGTATGCAGACCAGGTCGGCCTGTACAACGTCGCGCTGTCGATGAAGAAGTACGC CAAGGGCTACCACGGCGAAGCGTGGCAAGTCGCGCCGCTGCTGCAGAAGCTGGCGGACGAGGGCAAGGGCTTCAACGACT GA
Upstream 100 bases:
>100_bases CCGCTAGTGGTGAAGCGGCCGAGACAGGCCGGCAATGCAGCAAACAACCATATTCGAGAATTCGAATCCCGAGACAACCC AAGACACCAAAGGAACCAGC
Downstream 100 bases:
>100_bases AGCCAAGGCAGCAGCAAGGCTGACGGAGGCGAACATGAGACCCGGTCCGGATGACTGCCTGCTGGTAGTCGACGTGCAGA ACGACTTCATGCCAGGCGGC
Product: 3-hydroxyacyl-CoA dehydrogenase
Products: NA
Alternate protein names: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 693; Mature: 692
Protein sequence:
>693_residues MTAQYQVQDGVAVITLDNPPVNGLGHSTRLGIVDGMTRALDDAAVKAIVITGAGKAFSGGADIREFNTPKATQEPTLHSV IRVIEGSSKPVVAAVHSVAMGGGLELALGCNYRVASKGAQIALPEVKLGLLPGAGGTQRLPRVIGLEAAANMIVSGTAVP SEKFAGTKLFDEIVDGDVLPAAVKFAQNVAAAPGPYPKVRDLKVRHENPEGFLGFAKTTVGAMAKNFPAPLKCLEAVAGS LKPFEQGLKEERDGFLYLVTTPESRALRHAFFGERAASKIPDVPSDTPLRKIEKIAVIGAGTMGGGISMNFLNAGIPVTI LETKQEALDRGIGIIRKNYENSAKKGKLTQEKVEQRMGLLSTTLSYDDIKDADMVIEAVFEEMGVKEIVFKKLDEVMKQG AILASNTSTLDVDKIASFTKRPQDVVGMHFFSPANVMKLLEVVRGAKTGKDVLATVMAIGKKIKKTAVVSGVCDGFIGNR MIEQYSRQAGYLLDEGALPEQVDRAIEKFGFAMGPFRMGDLAGNDIGWAIRKRRAVDKPDIQYSKTADLLCEMGRYGQKT GAGWYDYKAGDRKPYPNQQVNDMIVQHSKDLGITRRKISDEEIVERLVFALVNEGAKILEEGIASKASDIDMVYLTGYGF PLFRGGPMLYADQVGLYNVALSMKKYAKGYHGEAWQVAPLLQKLADEGKGFND
Sequences:
>Translated_693_residues MTAQYQVQDGVAVITLDNPPVNGLGHSTRLGIVDGMTRALDDAAVKAIVITGAGKAFSGGADIREFNTPKATQEPTLHSV IRVIEGSSKPVVAAVHSVAMGGGLELALGCNYRVASKGAQIALPEVKLGLLPGAGGTQRLPRVIGLEAAANMIVSGTAVP SEKFAGTKLFDEIVDGDVLPAAVKFAQNVAAAPGPYPKVRDLKVRHENPEGFLGFAKTTVGAMAKNFPAPLKCLEAVAGS LKPFEQGLKEERDGFLYLVTTPESRALRHAFFGERAASKIPDVPSDTPLRKIEKIAVIGAGTMGGGISMNFLNAGIPVTI LETKQEALDRGIGIIRKNYENSAKKGKLTQEKVEQRMGLLSTTLSYDDIKDADMVIEAVFEEMGVKEIVFKKLDEVMKQG AILASNTSTLDVDKIASFTKRPQDVVGMHFFSPANVMKLLEVVRGAKTGKDVLATVMAIGKKIKKTAVVSGVCDGFIGNR MIEQYSRQAGYLLDEGALPEQVDRAIEKFGFAMGPFRMGDLAGNDIGWAIRKRRAVDKPDIQYSKTADLLCEMGRYGQKT GAGWYDYKAGDRKPYPNQQVNDMIVQHSKDLGITRRKISDEEIVERLVFALVNEGAKILEEGIASKASDIDMVYLTGYGF PLFRGGPMLYADQVGLYNVALSMKKYAKGYHGEAWQVAPLLQKLADEGKGFND >Mature_692_residues TAQYQVQDGVAVITLDNPPVNGLGHSTRLGIVDGMTRALDDAAVKAIVITGAGKAFSGGADIREFNTPKATQEPTLHSVI RVIEGSSKPVVAAVHSVAMGGGLELALGCNYRVASKGAQIALPEVKLGLLPGAGGTQRLPRVIGLEAAANMIVSGTAVPS EKFAGTKLFDEIVDGDVLPAAVKFAQNVAAAPGPYPKVRDLKVRHENPEGFLGFAKTTVGAMAKNFPAPLKCLEAVAGSL KPFEQGLKEERDGFLYLVTTPESRALRHAFFGERAASKIPDVPSDTPLRKIEKIAVIGAGTMGGGISMNFLNAGIPVTIL ETKQEALDRGIGIIRKNYENSAKKGKLTQEKVEQRMGLLSTTLSYDDIKDADMVIEAVFEEMGVKEIVFKKLDEVMKQGA ILASNTSTLDVDKIASFTKRPQDVVGMHFFSPANVMKLLEVVRGAKTGKDVLATVMAIGKKIKKTAVVSGVCDGFIGNRM IEQYSRQAGYLLDEGALPEQVDRAIEKFGFAMGPFRMGDLAGNDIGWAIRKRRAVDKPDIQYSKTADLLCEMGRYGQKTG AGWYDYKAGDRKPYPNQQVNDMIVQHSKDLGITRRKISDEEIVERLVFALVNEGAKILEEGIASKASDIDMVYLTGYGFP LFRGGPMLYADQVGLYNVALSMKKYAKGYHGEAWQVAPLLQKLADEGKGFND
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI68989263, Length=715, Percent_Identity=41.5384615384615, Blast_Score=518, Evalue=1e-147, Organism=Homo sapiens, GI261878539, Length=618, Percent_Identity=41.5857605177994, Blast_Score=452, Evalue=1e-127, Organism=Homo sapiens, GI20127408, Length=734, Percent_Identity=32.016348773842, Blast_Score=302, Evalue=6e-82, Organism=Homo sapiens, GI296179429, Length=291, Percent_Identity=31.9587628865979, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI296179427, Length=308, Percent_Identity=30.1948051948052, Blast_Score=129, Evalue=1e-29, Organism=Homo sapiens, GI194097323, Length=193, Percent_Identity=35.2331606217617, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI70995211, Length=135, Percent_Identity=34.0740740740741, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI37594471, Length=142, Percent_Identity=33.0985915492958, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI37594469, Length=142, Percent_Identity=33.0985915492958, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI115430219, Length=236, Percent_Identity=24.5762711864407, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1790281, Length=675, Percent_Identity=31.8518518518519, Blast_Score=289, Evalue=4e-79, Organism=Escherichia coli, GI1788682, Length=717, Percent_Identity=30.9623430962343, Blast_Score=285, Evalue=5e-78, Organism=Escherichia coli, GI1787661, Length=290, Percent_Identity=35.1724137931034, Blast_Score=157, Evalue=3e-39, Organism=Escherichia coli, GI1787659, Length=187, Percent_Identity=34.2245989304813, Blast_Score=109, Evalue=6e-25, Organism=Escherichia coli, GI221142681, Length=248, Percent_Identity=30.6451612903226, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1787660, Length=198, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508951, Length=737, Percent_Identity=33.5142469470828, Blast_Score=314, Evalue=1e-85, Organism=Caenorhabditis elegans, GI17508953, Length=737, Percent_Identity=33.5142469470828, Blast_Score=313, Evalue=2e-85, Organism=Caenorhabditis elegans, GI17558304, Length=732, Percent_Identity=31.6939890710383, Blast_Score=306, Evalue=3e-83, Organism=Caenorhabditis elegans, GI25144276, Length=626, Percent_Identity=33.5463258785943, Blast_Score=265, Evalue=8e-71, Organism=Caenorhabditis elegans, GI71985923, Length=370, Percent_Identity=33.5135135135135, Blast_Score=234, Evalue=2e-61, Organism=Caenorhabditis elegans, GI71985930, Length=370, Percent_Identity=30.2702702702703, Blast_Score=225, Evalue=6e-59, Organism=Caenorhabditis elegans, GI17553560, Length=290, Percent_Identity=31.0344827586207, Blast_Score=141, Evalue=9e-34, Organism=Caenorhabditis elegans, GI17549919, Length=293, Percent_Identity=33.4470989761092, Blast_Score=138, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17563036, Length=291, Percent_Identity=31.6151202749141, Blast_Score=124, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17554946, Length=187, Percent_Identity=34.7593582887701, Blast_Score=99, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25145438, Length=158, Percent_Identity=36.7088607594937, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17540714, Length=192, Percent_Identity=30.2083333333333, Blast_Score=92, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560910, Length=184, Percent_Identity=30.9782608695652, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI19921000, Length=740, Percent_Identity=32.972972972973, Blast_Score=305, Evalue=5e-83, Organism=Drosophila melanogaster, GI24583077, Length=740, Percent_Identity=32.972972972973, Blast_Score=305, Evalue=7e-83, Organism=Drosophila melanogaster, GI24583079, Length=740, Percent_Identity=32.972972972973, Blast_Score=305, Evalue=7e-83, Organism=Drosophila melanogaster, GI20129971, Length=183, Percent_Identity=35.5191256830601, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI24653477, Length=183, Percent_Identity=35.5191256830601, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI24653139, Length=157, Percent_Identity=34.3949044585987, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI21357171, Length=194, Percent_Identity=29.3814432989691, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012799 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =5.3.3.8; =1.1.1.35 [H]
Molecular weight: Translated: 74621; Mature: 74490
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQYQVQDGVAVITLDNPPVNGLGHSTRLGIVDGMTRALDDAAVKAIVITGAGKAFSGG CCCCEEECCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHEEEEEEECCCCCCCCC ADIREFNTPKATQEPTLHSVIRVIEGSSKPVVAAVHSVAMGGGLELALGCNYRVASKGAQ CCCHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCCCCE IALPEVKLGLLPGAGGTQRLPRVIGLEAAANMIVSGTAVPSEKFAGTKLFDEIVDGDVLP EECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHCCHHHHHHHHCCCHHH AAVKFAQNVAAAPGPYPKVRDLKVRHENPEGFLGFAKTTVGAMAKNFPAPLKCLEAVAGS HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC LKPFEQGLKEERDGFLYLVTTPESRALRHAFFGERAASKIPDVPSDTPLRKIEKIAVIGA CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEC GTMGGGISMNFLNAGIPVTILETKQEALDRGIGIIRKNYENSAKKGKLTQEKVEQRMGLL CCCCCCCEEEEECCCCCEEEECCHHHHHHHCHHHHHHCCCCHHHCCCCCHHHHHHHHHHH STTLSYDDIKDADMVIEAVFEEMGVKEIVFKKLDEVMKQGAILASNTSTLDVDKIASFTK HHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHC RPQDVVGMHFFSPANVMKLLEVVRGAKTGKDVLATVMAIGKKIKKTAVVSGVCDGFIGNR CCHHHHCCHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MIEQYSRQAGYLLDEGALPEQVDRAIEKFGFAMGPFRMGDLAGNDIGWAIRKRRAVDKPD HHHHHHHHCCCEECCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHCCCCCC IQYSKTADLLCEMGRYGQKTGAGWYDYKAGDRKPYPNQQVNDMIVQHSKDLGITRRKISD CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCH EEIVERLVFALVNEGAKILEEGIASKASDIDMVYLTGYGFPLFRGGPMLYADQVGLYNVA HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCEEEECCCCHHHHH LSMKKYAKGYHGEAWQVAPLLQKLADEGKGFND HHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCC >Mature Secondary Structure TAQYQVQDGVAVITLDNPPVNGLGHSTRLGIVDGMTRALDDAAVKAIVITGAGKAFSGG CCCEEECCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHEEEEEEECCCCCCCCC ADIREFNTPKATQEPTLHSVIRVIEGSSKPVVAAVHSVAMGGGLELALGCNYRVASKGAQ CCCHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCCCCE IALPEVKLGLLPGAGGTQRLPRVIGLEAAANMIVSGTAVPSEKFAGTKLFDEIVDGDVLP EECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHCCHHHHHHHHCCCHHH AAVKFAQNVAAAPGPYPKVRDLKVRHENPEGFLGFAKTTVGAMAKNFPAPLKCLEAVAGS HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC LKPFEQGLKEERDGFLYLVTTPESRALRHAFFGERAASKIPDVPSDTPLRKIEKIAVIGA CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEC GTMGGGISMNFLNAGIPVTILETKQEALDRGIGIIRKNYENSAKKGKLTQEKVEQRMGLL CCCCCCCEEEEECCCCCEEEECCHHHHHHHCHHHHHHCCCCHHHCCCCCHHHHHHHHHHH STTLSYDDIKDADMVIEAVFEEMGVKEIVFKKLDEVMKQGAILASNTSTLDVDKIASFTK HHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHC RPQDVVGMHFFSPANVMKLLEVVRGAKTGKDVLATVMAIGKKIKKTAVVSGVCDGFIGNR CCHHHHCCHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MIEQYSRQAGYLLDEGALPEQVDRAIEKFGFAMGPFRMGDLAGNDIGWAIRKRRAVDKPD HHHHHHHHCCCEECCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHCCCCCC IQYSKTADLLCEMGRYGQKTGAGWYDYKAGDRKPYPNQQVNDMIVQHSKDLGITRRKISD CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCH EEIVERLVFALVNEGAKILEEGIASKASDIDMVYLTGYGFPLFRGGPMLYADQVGLYNVA HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCEEEECCCCHHHHH LSMKKYAKGYHGEAWQVAPLLQKLADEGKGFND HHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA