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The map label for this gene is ydhC [H]

Identifier: 73540350

GI number: 73540350

Start: 692707

End: 693441

Strand: Direct

Name: ydhC [H]

Synonym: Reut_A0644

Alternate gene names: 73540350

Gene position: 692707-693441 (Clockwise)

Preceding gene: 73540347

Following gene: 73540351

Centisome position: 18.2

GC content: 64.9

Gene sequence:

>735_bases
ATGCGGATCATCCAGCAAGCGCTGTACCTTGAAGTTGCGGACCGCTTGCGCGGCATGATCGACGCGCACGCACTCATGCC
GGGTGCATGGATCGACGAGACCACGCTCGCGACCCAGCTTGGCATTTCGCGCACACCGCTGCGCGAGGCGCTCAAGGTGC
TCGCCGCCGAAGGTCTGGTCCGGCTAGAGCCGCGACGTGGCTGCTTCGTCAACGAGTTGTCCGAGCGCGATCTCGACGAG
ATCTTCCCGCTCATGGCGCTGCTCGAGGGCCGTTGTGCCTACGAGGCGGCACGCAATGCCACGGCGCAGGACCTCGAAGC
GCTTGAAGGGCTGCACGCCGAGCTGGCGCGGCATGCCGGCGCCGGCGATATCGACGCCTACTACGAAACCAATTTCCAGA
TTCACGAAGCGATCCAGCGGCTGGCCGGCAACCGCTGGCTGTCGGGCCTGATCAGCGACCTGCGCAAGGTGCTGCGGCTG
TCGCGGCACAAGAGCCTGAAGCTGCCGGGTCGCATCAACGAATCGTGCGCGGAACACCTGAGCATTTTTTCGGCACTCAA
GGCGCATGATCCCGAAGGCGCGGAAGCGCTGATGAAGACCCATCTGCTGCGCCAGCGCGTGGCGCTCACGGCGCTGGACC
GCAGCGCGCAGGCCGGAACTGCCGTGCTGCACGCGCTCCCGAATGCTTCAACGGTTTCCTCAGTTTCATCACGCACCAAG
GCGGATACCCCATGA

Upstream 100 bases:

>100_bases
AATGCCTTGCCTGTGACTTATTGTCATCCATAATTATGAATTATGGGCTTGACGGCACAATGCGCGGAAGCCTTGAATCC
CAGCTTTTCGGCGGAGGCTC

Downstream 100 bases:

>100_bases
GCTCCCTCGACTCCGGCGACCAGAAGATCAGCGCCCCGCTGGGCGTGAGTGAACCATCCGGCCCCAACCTGTTGTCCCGG
ATCGGCCGCTGGTGGGGCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRIIQQALYLEVADRLRGMIDAHALMPGAWIDETTLATQLGISRTPLREALKVLAAEGLVRLEPRRGCFVNELSERDLDE
IFPLMALLEGRCAYEAARNATAQDLEALEGLHAELARHAGAGDIDAYYETNFQIHEAIQRLAGNRWLSGLISDLRKVLRL
SRHKSLKLPGRINESCAEHLSIFSALKAHDPEGAEALMKTHLLRQRVALTALDRSAQAGTAVLHALPNASTVSSVSSRTK
ADTP

Sequences:

>Translated_244_residues
MRIIQQALYLEVADRLRGMIDAHALMPGAWIDETTLATQLGISRTPLREALKVLAAEGLVRLEPRRGCFVNELSERDLDE
IFPLMALLEGRCAYEAARNATAQDLEALEGLHAELARHAGAGDIDAYYETNFQIHEAIQRLAGNRWLSGLISDLRKVLRL
SRHKSLKLPGRINESCAEHLSIFSALKAHDPEGAEALMKTHLLRQRVALTALDRSAQAGTAVLHALPNASTVSSVSSRTK
ADTP
>Mature_244_residues
MRIIQQALYLEVADRLRGMIDAHALMPGAWIDETTLATQLGISRTPLREALKVLAAEGLVRLEPRRGCFVNELSERDLDE
IFPLMALLEGRCAYEAARNATAQDLEALEGLHAELARHAGAGDIDAYYETNFQIHEAIQRLAGNRWLSGLISDLRKVLRL
SRHKSLKLPGRINESCAEHLSIFSALKAHDPEGAEALMKTHLLRQRVALTALDRSAQAGTAVLHALPNASTVSSVSSRTK
ADTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=205, Percent_Identity=29.7560975609756, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787821, Length=183, Percent_Identity=27.3224043715847, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790032, Length=254, Percent_Identity=27.9527559055118, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26800; Mature: 26800

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIQQALYLEVADRLRGMIDAHALMPGAWIDETTLATQLGISRTPLREALKVLAAEGLV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCE
RLEPRRGCFVNELSERDLDEIFPLMALLEGRCAYEAARNATAQDLEALEGLHAELARHAG
EECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
AGDIDAYYETNFQIHEAIQRLAGNRWLSGLISDLRKVLRLSRHKSLKLPGRINESCAEHL
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
SIFSALKAHDPEGAEALMKTHLLRQRVALTALDRSAQAGTAVLHALPNASTVSSVSSRTK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
ADTP
CCCC
>Mature Secondary Structure
MRIIQQALYLEVADRLRGMIDAHALMPGAWIDETTLATQLGISRTPLREALKVLAAEGLV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCE
RLEPRRGCFVNELSERDLDEIFPLMALLEGRCAYEAARNATAQDLEALEGLHAELARHAG
EECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
AGDIDAYYETNFQIHEAIQRLAGNRWLSGLISDLRKVLRLSRHKSLKLPGRINESCAEHL
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
SIFSALKAHDPEGAEALMKTHLLRQRVALTALDRSAQAGTAVLHALPNASTVSSVSSRTK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
ADTP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]