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The map label for this gene is ybaK [H]

Identifier: 73540282

GI number: 73540282

Start: 628673

End: 629164

Strand: Reverse

Name: ybaK [H]

Synonym: Reut_A0576

Alternate gene names: 73540282

Gene position: 629164-628673 (Counterclockwise)

Preceding gene: 161611265

Following gene: 73540281

Centisome position: 16.53

GC content: 64.23

Gene sequence:

>492_bases
ATGAGCAAAGCGAAACATATCTCCGAAACCCCGGCCACGCAGTTCCTGCGCCGCCACAACGTCGCCTTCGGCGAGCATCC
GTACGACTACGTGGACCACGGCGGCACCGGCGAATCCGCCCGTCAGCTCGGCGTGCCGGAGCACGATGTCGTCAAAACGC
TGATCATGGAAGACGAGCGCGCGCAGCCGCTGGTCGTGTTGATGCATGGCGACTGTTCGGTCTCCACCAAGAACCTGGCG
CGCCAGATCGGCTGCAAGAGCGTGCAGCCCTGCAAGCCCGAGGTCGCGCAGCGGCACAGCGGCTACATGGTGGGCGGCAC
GTCCCCATTCGGCACAAAGAAGCGCATGCCCGTCTATGTCGAGTCGACGGTACTGGCGCTGGAGAAGATCTATATCAACG
GCGGCCGGCGCGGCTATCTGGTCAGCCTGGACCCGAAGCTGCTGACCACGCTGGTCGATGCGAAGGCCGTGGAATGCGCG
CTGCCTGACTGA

Upstream 100 bases:

>100_bases
CACCCACGTGGCGCGCGAACGGCTGCGCGAACTGCACCAGCAGCACCATCCACGCGGGTAAGACGAGCCGGGCTCGCCCC
TGGCGCGACGAGAAGCGACA

Downstream 100 bases:

>100_bases
ACCGCCCGCGCCGCTCGCGGATATTGGGGAAGTCACGGTCGTGGCGACCCCGCCGCCGCGCTACAATCCCGCCAATTCCA
GACAAGGCAGTCACTGCCGC

Product: YbaK/prolyl-tRNA synthetase associated region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKAKHISETPATQFLRRHNVAFGEHPYDYVDHGGTGESARQLGVPEHDVVKTLIMEDERAQPLVVLMHGDCSVSTKNLA
RQIGCKSVQPCKPEVAQRHSGYMVGGTSPFGTKKRMPVYVESTVLALEKIYINGGRRGYLVSLDPKLLTTLVDAKAVECA
LPD

Sequences:

>Translated_163_residues
MSKAKHISETPATQFLRRHNVAFGEHPYDYVDHGGTGESARQLGVPEHDVVKTLIMEDERAQPLVVLMHGDCSVSTKNLA
RQIGCKSVQPCKPEVAQRHSGYMVGGTSPFGTKKRMPVYVESTVLALEKIYINGGRRGYLVSLDPKLLTTLVDAKAVECA
LPD
>Mature_162_residues
SKAKHISETPATQFLRRHNVAFGEHPYDYVDHGGTGESARQLGVPEHDVVKTLIMEDERAQPLVVLMHGDCSVSTKNLAR
QIGCKSVQPCKPEVAQRHSGYMVGGTSPFGTKKRMPVYVESTVLALEKIYINGGRRGYLVSLDPKLLTTLVDAKAVECAL
PD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=158, Percent_Identity=32.2784810126582, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17875; Mature: 17744

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAKHISETPATQFLRRHNVAFGEHPYDYVDHGGTGESARQLGVPEHDVVKTLIMEDER
CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCC
AQPLVVLMHGDCSVSTKNLARQIGCKSVQPCKPEVAQRHSGYMVGGTSPFGTKKRMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCEEE
ESTVLALEKIYINGGRRGYLVSLDPKLLTTLVDAKAVECALPD
HHHHHHHHHEEECCCCEEEEEEECHHHHHHHHHHHHHEECCCC
>Mature Secondary Structure 
SKAKHISETPATQFLRRHNVAFGEHPYDYVDHGGTGESARQLGVPEHDVVKTLIMEDER
CCCCCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCC
AQPLVVLMHGDCSVSTKNLARQIGCKSVQPCKPEVAQRHSGYMVGGTSPFGTKKRMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCEEE
ESTVLALEKIYINGGRRGYLVSLDPKLLTTLVDAKAVECALPD
HHHHHHHHHEEECCCCEEEEEEECHHHHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]