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The map label for this gene is cspB [C]

Identifier: 73540243

GI number: 73540243

Start: 583372

End: 583959

Strand: Reverse

Name: cspB [C]

Synonym: Reut_A0537

Alternate gene names: 73540243

Gene position: 583959-583372 (Counterclockwise)

Preceding gene: 73540244

Following gene: 73540242

Centisome position: 15.34

GC content: 53.91

Gene sequence:

>588_bases
ATGGCTGCACCCTCAAAACTCATGAACACACGCATCAGCGGCACCCTCAAAAGCTGGAACAAGGACAAGGGGTTCGGGTT
TATTGCCCCGTCGAATGGTGGTCGGGACATCTTCGTTCATATTTCGGACTACCCGAGGCAGGGTGGCATGCCGAAGATTG
GTGAGTCATTGACGTTCCTTGTCACGCTCAACCAGGACGGGAAGAATAAGGCCATCAACGTTCAACGGCCGGGGGTCCCT
CTGACGGCACCATACCGAAGTCGTATGAAACCGCCGGCGCGCCAGGAAAAATCACTTGGATCTCGCCTGGTCGGATTGGT
CACTGTTGCTGCACTTTGCGCTTTTGGATACAAGTACTTCGCCCCCAAGTCCGGCGCATCGGAAACTTTGTCCTTGGAGG
CAAATATGGCCCCAATCTCGGCAGCGTCCACCGCATTCAGTTGTGATGGCAGGACACATTGTTCGCAAATGACCTCCTGC
AGTGAAGCCAAGTTTTTCCTGAACAGCTGTCCAAACACTCAGATGGACGGCGATAGCGATGGCATACCCTGTGAATCCCA
GTGGTGTACTAGCGCTTTTTCCAGATAG

Upstream 100 bases:

>100_bases
GGTAGAGCGGCAACGTAGGGACGGTTCGTTCTGGGGTTGCCGTAACTACTCAAAGGGGTGCCGGTTCAAGCTTGCACGCG
CGGCGTAACTTCACCCCACA

Downstream 100 bases:

>100_bases
CGGTCGGGCGACTTCCGCCACTGTCTCGCAAATATCTGTATTAACACCCGGCCAAGGCAGTCGGCCGGGACGTGATGATG
CACGGCCCGAGGCCTCGAAG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: Excalibur; Cold Shock Domain-Contain Protein; Cold-Shock Protein; Cold Shock Domain Family Protein; Cold Shock Domain-Containing Protein CspD; Cold Shock Domain-Containing Protein; Excalibur Domain-Containing Protein; Cold Shock Family Protein; Cold Shock/Excaliber Domain-Containing Protein CspD

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MAAPSKLMNTRISGTLKSWNKDKGFGFIAPSNGGRDIFVHISDYPRQGGMPKIGESLTFLVTLNQDGKNKAINVQRPGVP
LTAPYRSRMKPPARQEKSLGSRLVGLVTVAALCAFGYKYFAPKSGASETLSLEANMAPISAASTAFSCDGRTHCSQMTSC
SEAKFFLNSCPNTQMDGDSDGIPCESQWCTSAFSR

Sequences:

>Translated_195_residues
MAAPSKLMNTRISGTLKSWNKDKGFGFIAPSNGGRDIFVHISDYPRQGGMPKIGESLTFLVTLNQDGKNKAINVQRPGVP
LTAPYRSRMKPPARQEKSLGSRLVGLVTVAALCAFGYKYFAPKSGASETLSLEANMAPISAASTAFSCDGRTHCSQMTSC
SEAKFFLNSCPNTQMDGDSDGIPCESQWCTSAFSR
>Mature_194_residues
AAPSKLMNTRISGTLKSWNKDKGFGFIAPSNGGRDIFVHISDYPRQGGMPKIGESLTFLVTLNQDGKNKAINVQRPGVPL
TAPYRSRMKPPARQEKSLGSRLVGLVTVAALCAFGYKYFAPKSGASETLSLEANMAPISAASTAFSCDGRTHCSQMTSCS
EAKFFLNSCPNTQMDGDSDGIPCESQWCTSAFSR

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20947; Mature: 20816

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPSKLMNTRISGTLKSWNKDKGFGFIAPSNGGRDIFVHISDYPRQGGMPKIGESLTFL
CCCCHHHHHHHHCCHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEE
VTLNQDGKNKAINVQRPGVPLTAPYRSRMKPPARQEKSLGSRLVGLVTVAALCAFGYKYF
EEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHC
APKSGASETLSLEANMAPISAASTAFSCDGRTHCSQMTSCSEAKFFLNSCPNTQMDGDSD
CCCCCCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GIPCESQWCTSAFSR
CCCCCHHHHHHHHCC
>Mature Secondary Structure 
AAPSKLMNTRISGTLKSWNKDKGFGFIAPSNGGRDIFVHISDYPRQGGMPKIGESLTFL
CCCHHHHHHHHCCHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEE
VTLNQDGKNKAINVQRPGVPLTAPYRSRMKPPARQEKSLGSRLVGLVTVAALCAFGYKYF
EEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHC
APKSGASETLSLEANMAPISAASTAFSCDGRTHCSQMTSCSEAKFFLNSCPNTQMDGDSD
CCCCCCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GIPCESQWCTSAFSR
CCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA