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The map label for this gene is kdsD [H]

Identifier: 73540065

GI number: 73540065

Start: 388416

End: 389399

Strand: Reverse

Name: kdsD [H]

Synonym: Reut_A0359

Alternate gene names: 73540065

Gene position: 389399-388416 (Counterclockwise)

Preceding gene: 73540067

Following gene: 73540064

Centisome position: 10.23

GC content: 67.17

Gene sequence:

>984_bases
ATGATAGCCAATTTCGATGCGGATCGAGCACTCCGGCTCGCCCAAAGTACCCTCCAGATTGAAGCCGAAGCGGTCGCCGC
ACTTTCGGGGCGCCTGACCCCGGACTTCTCGCACGCGGTGCAGCTCGTCCTGCAGTGCACGGGACGCGTCGTGGTGTCGG
GCATCGGCAAGTCAGGCCATATCGGCCGCAAGGTCGCGGCGACGCTGGCCTCGACCGGCACGCCGGCCTTCTTTGTCCAT
CCGGCCGAAGCCAGCCACGGCGATCTCGGCATGGTCACGCGCGATGACGTCCTGATCGCATTCTCCAATTCCGGCGAAAC
CGGCGAGCTGCTGTCGATCATCCCGATCGTCAAGCGCATCGGCGCGCGGCTGATCTCGGTCACCGGCAACCCGGAATCGA
ACCTGGCCAAGCTCGCAGACGCCCATCTCGATGCCGGCGTGGAAAAGGAAGCCTGCCCGCTGAACCTGGCGCCAACGGCC
AGCACCACGGCGGCGCTGGCACTCGGCGACGCGCTCGCGGTCGCGGTGCTCGATGCGCGCGGCTTCGGCGAGGAAGACTT
CGCGCGCTCGCACCCGGGCGGCGCGCTCGGCCGCAAGCTGCTGACCCACGTGCGCGATGTGATGCGCAGCGGCAATGCGG
TGCCGGAGGTCCGCGAAAACACGCCGCTGGCCCAGGCGCTCATGGAAATCACGCGCAAGGGCATGGCCATGACCGCCGTG
GTCGACTCTGACGGCAAGGCCATCGGCGTCTTCACCGACGGCGACCTGCGCCGCCTGCTTGAAACCCCGCGCGACTGGAA
GACCGTGCCGATCGGCGATGTGATGCACCACAACCCGCACGTGGTGCACGAAGACCAGTTGGCCGTCGAAGCCGTGCAGG
TCATGGAAGCCAACCGCATCAACCAGTTGCTGGTGGTCGACCATGACGGGCGCCTGGTGGGCGCGCTGCACATCCACGAC
CTGACCCGCGCCAAGGTCATCTGA

Upstream 100 bases:

>100_bases
GGCTGCGCCCCGGCACGGGCCCTGCCGGCGGAACACGGCAAGCGCGGCGCTTGCCGGGACGGCCCGGGCGTCGCCGCATT
CGTTGGTATACTTCGACGCC

Downstream 100 bases:

>100_bases
TCCACGGCGCGCACGCAAAGAGACCATGCAGGCCCTCCTGTCCTCCCTCACCGGGATCGTCTTGCGCCTGCTGCCATTGC
TGCTGATGGCAGTGGTGGCA

Product: KpsF/GutQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIANFDADRALRLAQSTLQIEAEAVAALSGRLTPDFSHAVQLVLQCTGRVVVSGIGKSGHIGRKVAATLASTGTPAFFVH
PAEASHGDLGMVTRDDVLIAFSNSGETGELLSIIPIVKRIGARLISVTGNPESNLAKLADAHLDAGVEKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGEEDFARSHPGGALGRKLLTHVRDVMRSGNAVPEVRENTPLAQALMEITRKGMAMTAV
VDSDGKAIGVFTDGDLRRLLETPRDWKTVPIGDVMHHNPHVVHEDQLAVEAVQVMEANRINQLLVVDHDGRLVGALHIHD
LTRAKVI

Sequences:

>Translated_327_residues
MIANFDADRALRLAQSTLQIEAEAVAALSGRLTPDFSHAVQLVLQCTGRVVVSGIGKSGHIGRKVAATLASTGTPAFFVH
PAEASHGDLGMVTRDDVLIAFSNSGETGELLSIIPIVKRIGARLISVTGNPESNLAKLADAHLDAGVEKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGEEDFARSHPGGALGRKLLTHVRDVMRSGNAVPEVRENTPLAQALMEITRKGMAMTAV
VDSDGKAIGVFTDGDLRRLLETPRDWKTVPIGDVMHHNPHVVHEDQLAVEAVQVMEANRINQLLVVDHDGRLVGALHIHD
LTRAKVI
>Mature_327_residues
MIANFDADRALRLAQSTLQIEAEAVAALSGRLTPDFSHAVQLVLQCTGRVVVSGIGKSGHIGRKVAATLASTGTPAFFVH
PAEASHGDLGMVTRDDVLIAFSNSGETGELLSIIPIVKRIGARLISVTGNPESNLAKLADAHLDAGVEKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGEEDFARSHPGGALGRKLLTHVRDVMRSGNAVPEVRENTPLAQALMEITRKGMAMTAV
VDSDGKAIGVFTDGDLRRLLETPRDWKTVPIGDVMHHNPHVVHEDQLAVEAVQVMEANRINQLLVVDHDGRLVGALHIHD
LTRAKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=323, Percent_Identity=52.9411764705882, Blast_Score=333, Evalue=1e-92,
Organism=Escherichia coli, GI87082151, Length=317, Percent_Identity=47.6340694006309, Blast_Score=286, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34571; Mature: 34571

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIANFDADRALRLAQSTLQIEAEAVAALSGRLTPDFSHAVQLVLQCTGRVVVSGIGKSGH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
IGRKVAATLASTGTPAFFVHPAEASHGDLGMVTRDDVLIAFSNSGETGELLSIIPIVKRI
CHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHH
GARLISVTGNPESNLAKLADAHLDAGVEKEACPLNLAPTASTTAALALGDALAVAVLDAR
CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGEEDFARSHPGGALGRKLLTHVRDVMRSGNAVPEVRENTPLAQALMEITRKGMAMTAV
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
VDSDGKAIGVFTDGDLRRLLETPRDWKTVPIGDVMHHNPHVVHEDQLAVEAVQVMEANRI
EECCCCEEEEEECHHHHHHHCCCCCCCCCCCCHHHCCCCCEEECHHHHHHHHHHHHHCCC
NQLLVVDHDGRLVGALHIHDLTRAKVI
CEEEEEECCCCEEEEEEEEHHHHHCCC
>Mature Secondary Structure
MIANFDADRALRLAQSTLQIEAEAVAALSGRLTPDFSHAVQLVLQCTGRVVVSGIGKSGH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
IGRKVAATLASTGTPAFFVHPAEASHGDLGMVTRDDVLIAFSNSGETGELLSIIPIVKRI
CHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHH
GARLISVTGNPESNLAKLADAHLDAGVEKEACPLNLAPTASTTAALALGDALAVAVLDAR
CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGEEDFARSHPGGALGRKLLTHVRDVMRSGNAVPEVRENTPLAQALMEITRKGMAMTAV
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
VDSDGKAIGVFTDGDLRRLLETPRDWKTVPIGDVMHHNPHVVHEDQLAVEAVQVMEANRI
EECCCCEEEEEECHHHHHHHCCCCCCCCCCCCHHHCCCCCEEECHHHHHHHHHHHHHCCC
NQLLVVDHDGRLVGALHIHDLTRAKVI
CEEEEEECCCCEEEEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]