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The map label for this gene is ycaN [H]

Identifier: 73539717

GI number: 73539717

Start: 14468

End: 15436

Strand: Direct

Name: ycaN [H]

Synonym: Reut_A0011

Alternate gene names: 73539717

Gene position: 14468-15436 (Clockwise)

Preceding gene: 73539715

Following gene: 73539718

Centisome position: 0.38

GC content: 66.15

Gene sequence:

>969_bases
TTGGCGTTGCAGTGTTTGATAATCCGGCCTAGATTGAATGGGCTGTTTCAAATTTTGAACACTGGCATGGAATTCAACGA
TCTGGCTGCGTTCGTGTCGGTGGCCCGCGCCGGGGGCTTTCGGGATGCGGCGCGGATCAGCGGTGTCTCGGCGTCGAGCC
TCAGCATCGCCGTGCGCCGCCTGGAGTCGAAGCTGGGCCTGCGCCTGCTCAACCGCACCACGCGCAGCGTCGCCCCGACC
GAAGCGGGGCTGCGCCTGCTCGAGCGGCTCACGCCGCTGTTCAGCGAGATGGAGTCCGCGCTGGACGTCCTGAACGCCTT
CCGCGACAAGCCATCCGGCACGCTCAAGCTGAACGTGCCATCGAGCGCCGCGTGGACGGTGTTGCCAGCCATCCTCCCGC
CGTTCCTGGAGGCCTACCCGGACATCCGTGTAGAGGTCGTGGTCGAGGATGGATTCGTCGACGTGCTGGCCATCGGCTGC
GACGCCGGCATCCGCTACGAGGAGCGGCTTGAGCAGGACATGATCGCCATCCCGATCGGGCCGCGCGTGCAATGCTTCGC
GACGGCGGCAACGCCCGGCTATCTCGACAAGCACGGCAGGCCGGCGCATCCGCGCGATCTGCTCTCGCACGTCTGCCTGC
GCGGGCAGTTCGCCAGCGGCGCGACGCCACCGTGGGTGTTCGAGCGGGATGGGGAGGCGTTGCGGCTGGATCCGCCGACT
CGGTTACTGATCCGGCCCGCTGCGTCGATCGACCTGGCGATCAGTGCGGCCCTGGCCGGGGTGGGAGTTATCCACATCTT
TGAGGGGAGGCTGCGGCCATATCTGGAGAGCGGGGCGCTGGAGCCGATCCTTGAACCTTGGTGGCAGCAGTTCTCGGGAC
CGTTTCTCTACTATCCGGGGCGAAGGCATTTGCCGGCGCCGTTGCGGGCGTTCGTGGATTTCTTGAAGGACAGGGGAGCG
CAGGGTTGA

Upstream 100 bases:

>100_bases
CCGGCAAGGGTGTAGGTGGTGGCGGGACGACGAGGTTGGTGCGTGGGGGACATGGCGTTCTCCTTGATTCGGTTTGGCTG
AACAGGTGGCGCCAGTATGT

Downstream 100 bases:

>100_bases
GCGACGAAGCTCACGCCGGTCTCGCCGAATAGGAAATTTCGAGACAGTTTTTCGAATTCGCCCCATATCCGCCGCTAGTC
ACGCTTGTAATCATCTTTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MALQCLIIRPRLNGLFQILNTGMEFNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRRLESKLGLRLLNRTTRSVAPT
EAGLRLLERLTPLFSEMESALDVLNAFRDKPSGTLKLNVPSSAAWTVLPAILPPFLEAYPDIRVEVVVEDGFVDVLAIGC
DAGIRYEERLEQDMIAIPIGPRVQCFATAATPGYLDKHGRPAHPRDLLSHVCLRGQFASGATPPWVFERDGEALRLDPPT
RLLIRPAASIDLAISAALAGVGVIHIFEGRLRPYLESGALEPILEPWWQQFSGPFLYYPGRRHLPAPLRAFVDFLKDRGA
QG

Sequences:

>Translated_322_residues
MALQCLIIRPRLNGLFQILNTGMEFNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRRLESKLGLRLLNRTTRSVAPT
EAGLRLLERLTPLFSEMESALDVLNAFRDKPSGTLKLNVPSSAAWTVLPAILPPFLEAYPDIRVEVVVEDGFVDVLAIGC
DAGIRYEERLEQDMIAIPIGPRVQCFATAATPGYLDKHGRPAHPRDLLSHVCLRGQFASGATPPWVFERDGEALRLDPPT
RLLIRPAASIDLAISAALAGVGVIHIFEGRLRPYLESGALEPILEPWWQQFSGPFLYYPGRRHLPAPLRAFVDFLKDRGA
QG
>Mature_321_residues
ALQCLIIRPRLNGLFQILNTGMEFNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRRLESKLGLRLLNRTTRSVAPTE
AGLRLLERLTPLFSEMESALDVLNAFRDKPSGTLKLNVPSSAAWTVLPAILPPFLEAYPDIRVEVVVEDGFVDVLAIGCD
AGIRYEERLEQDMIAIPIGPRVQCFATAATPGYLDKHGRPAHPRDLLSHVCLRGQFASGATPPWVFERDGEALRLDPPTR
LLIRPAASIDLAISAALAGVGVIHIFEGRLRPYLESGALEPILEPWWQQFSGPFLYYPGRRHLPAPLRAFVDFLKDRGAQ
G

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=40.1360544217687, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=36.7892976588629, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=28.135593220339, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=29.7297297297297, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=28.7671232876712, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=24.6666666666667, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081978, Length=301, Percent_Identity=27.906976744186, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=27.4576271186441, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=144, Percent_Identity=28.4722222222222, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=24.8, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790399, Length=141, Percent_Identity=29.0780141843972, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35268; Mature: 35137

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALQCLIIRPRLNGLFQILNTGMEFNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRR
CCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH
LESKLGLRLLNRTTRSVAPTEAGLRLLERLTPLFSEMESALDVLNAFRDKPSGTLKLNVP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
SSAAWTVLPAILPPFLEAYPDIRVEVVVEDGFVDVLAIGCDAGIRYEERLEQDMIAIPIG
CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHCCCEEEECCC
PRVQCFATAATPGYLDKHGRPAHPRDLLSHVCLRGQFASGATPPWVFERDGEALRLDPPT
CCEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEECCCC
RLLIRPAASIDLAISAALAGVGVIHIFEGRLRPYLESGALEPILEPWWQQFSGPFLYYPG
EEEEECCCCHHHHHHHHHHHHHHEEEECCHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC
RRHLPAPLRAFVDFLKDRGAQG
CCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALQCLIIRPRLNGLFQILNTGMEFNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRR
CEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH
LESKLGLRLLNRTTRSVAPTEAGLRLLERLTPLFSEMESALDVLNAFRDKPSGTLKLNVP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
SSAAWTVLPAILPPFLEAYPDIRVEVVVEDGFVDVLAIGCDAGIRYEERLEQDMIAIPIG
CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHCCCEEEECCC
PRVQCFATAATPGYLDKHGRPAHPRDLLSHVCLRGQFASGATPPWVFERDGEALRLDPPT
CCEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEECCCC
RLLIRPAASIDLAISAALAGVGVIHIFEGRLRPYLESGALEPILEPWWQQFSGPFLYYPG
EEEEECCCCHHHHHHHHHHHHHHEEEECCHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC
RRHLPAPLRAFVDFLKDRGAQG
CCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]