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The map label for this gene is fliA [H]

Identifier: 73539441

GI number: 73539441

Start: 2440412

End: 2441128

Strand: Direct

Name: fliA [H]

Synonym: Reut_B5619

Alternate gene names: 73539441

Gene position: 2440412-2441128 (Clockwise)

Preceding gene: 73539440

Following gene: 73539442

Centisome position: 89.52

GC content: 64.44

Gene sequence:

>717_bases
ATGTACACGATCCAGGGAAAGCTCGAACAGGCCGATGTGGTCAAGACCCACGCGCAGCTCGTGCGCCGCATCGCATTGCA
ACTGGCGGCCAAGCTGCCGGCCAGCGTGCAGATCGACGACCTGATCCAGGCCGGCATGATCGGCCTGCTCGACGCGGCCA
AGCGCTATGAGGACACCCATGGCGCGCGGTTCGAAACCTACGCCAGCCAGCGTATCCGCGGCGCCATGCTCGACGAGGTG
CGCGCCAACGACTGGCAGTCGCGCAGCCTGCGGCAGTTCACGCGCCGTATCGAACGCACGCAGCGCGGCCTCGAGCAGAA
GCTTGGCCGTGCACCGCTGGATTCGGAGGTTGCGCAGGAACTGGAAATGCCGCTGGACGAATACCAGACCTTGCTCAACG
AGGTCTATGGCTGCCAGCTGCTGCACTATGAAGATTTCGAGCGCTCCGGGGAAGAGGACTTCCTCGATCGCCACCTTGGC
GGCAGCGAAGACGGCAACCCGCTCACGCAGCTGATGGAAAACGGCATGCGCGCAGCCCTGATCCGCGCCATCGAGCGCCT
GCCCGAGCGCGAAAAGCTGGTGCTTTCACTGTGCTATGACCAGGAACTCAACCTGCGCGAAATCGGCGCCGTGCTCGACG
TGACCGAATCGCGCGTGTGCCAGATCCGCGGGCAAGCCATTACGCGCCTGCGCAACCAACTGCGCGGGCTGCTCTGA

Upstream 100 bases:

>100_bases
CGGCCTGATGCCGTGACTATTCGAAATTGACGAAGACCCTGAGCCGCCGGCCCGCAAAAACGGGCAGGTTCTGCAAGCAA
GCATTCACGAGAATTCCACC

Downstream 100 bases:

>100_bases
TGCGCGGGCGGCACGGCTCAGGTCAGGTTGCCATGCATGCCATCGCGGCGCTGCTTGCTGCGATGGCGACGATTACGTGG
GCCGCGCCCGATGACGGCAC

Product: sigma-70 region 4

Products: NA

Alternate protein names: Sigma-27; Sigma-28; Sigma-F factor [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MYTIQGKLEQADVVKTHAQLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDTHGARFETYASQRIRGAMLDEV
RANDWQSRSLRQFTRRIERTQRGLEQKLGRAPLDSEVAQELEMPLDEYQTLLNEVYGCQLLHYEDFERSGEEDFLDRHLG
GSEDGNPLTQLMENGMRAALIRAIERLPEREKLVLSLCYDQELNLREIGAVLDVTESRVCQIRGQAITRLRNQLRGLL

Sequences:

>Translated_238_residues
MYTIQGKLEQADVVKTHAQLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDTHGARFETYASQRIRGAMLDEV
RANDWQSRSLRQFTRRIERTQRGLEQKLGRAPLDSEVAQELEMPLDEYQTLLNEVYGCQLLHYEDFERSGEEDFLDRHLG
GSEDGNPLTQLMENGMRAALIRAIERLPEREKLVLSLCYDQELNLREIGAVLDVTESRVCQIRGQAITRLRNQLRGLL
>Mature_238_residues
MYTIQGKLEQADVVKTHAQLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDTHGARFETYASQRIRGAMLDEV
RANDWQSRSLRQFTRRIERTQRGLEQKLGRAPLDSEVAQELEMPLDEYQTLLNEVYGCQLLHYEDFERSGEEDFLDRHLG
GSEDGNPLTQLMENGMRAALIRAIERLPEREKLVLSLCYDQELNLREIGAVLDVTESRVCQIRGQAITRLRNQLRGLL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is specific for the flagellar operon [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=234, Percent_Identity=46.5811965811966, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1789448, Length=229, Percent_Identity=30.5676855895196, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 27250; Mature: 27250

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTIQGKLEQADVVKTHAQLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDTH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GARFETYASQRIRGAMLDEVRANDWQSRSLRQFTRRIERTQRGLEQKLGRAPLDSEVAQE
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LEMPLDEYQTLLNEVYGCQLLHYEDFERSGEEDFLDRHLGGSEDGNPLTQLMENGMRAAL
HCCCHHHHHHHHHHHHCCHHCCHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCHHHHH
IRAIERLPEREKLVLSLCYDQELNLREIGAVLDVTESRVCQIRGQAITRLRNQLRGLL
HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYTIQGKLEQADVVKTHAQLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDTH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GARFETYASQRIRGAMLDEVRANDWQSRSLRQFTRRIERTQRGLEQKLGRAPLDSEVAQE
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LEMPLDEYQTLLNEVYGCQLLHYEDFERSGEEDFLDRHLGGSEDGNPLTQLMENGMRAAL
HCCCHHHHHHHHHHHHCCHHCCHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCHHHHH
IRAIERLPEREKLVLSLCYDQELNLREIGAVLDVTESRVCQIRGQAITRLRNQLRGLL
HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7730257 [H]