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The map label for this gene is flhC [H]

Identifier: 73539427

GI number: 73539427

Start: 2424553

End: 2425158

Strand: Direct

Name: flhC [H]

Synonym: Reut_B5605

Alternate gene names: 73539427

Gene position: 2424553-2425158 (Clockwise)

Preceding gene: 73539426

Following gene: 73539428

Centisome position: 88.94

GC content: 62.38

Gene sequence:

>606_bases
TTGACCGCGCTCCTGCAGGCCCCTTCGGCGCGCAGCGTTACCACCGCGCCCGTTCCAAGCCGCAAGAGCGTACTGCAGGA
TGCCAACCAGACCCAGCTCGCCATCGAGCTGATCGGCCTGGGTGCGCGCCTGCAGGTGCTTGAGGCCGAGACTACGCTCT
CGCGCGACCGGCTGATCCGTCTCTACAAGGAGCTGCGGGGCGTTTCGCCGCCCAAGGGCATGCTCCCGTTCTCGACAGAC
TGGTTCACGACCTGGCTGCCGAATATCCATTCGTCGCTGTTCTTCTCCGCGTACCAGTTCATGGTGCAAGAGGGCGAAAC
CGTGGGTATTCGCGCCGTAGTGGCCGCTTACCGTCTGTATCTCGAGCATGTTTCGCTGCTCGGCGGCGAAATAGTCTTAA
GTTTCACCCGTGCCTGGACGTTAGTACGGTTCTTCGAGAGCAATATGCTGCAGCTGTCCAGCTGCACGTGTTGCGGTGGA
CAGTTCGTGACGCACGCCTATGAGCCGCACGCGAATTTCGTGTGCAGCCTGTGCCGTCCGCCCTCGCGTGCCGGGAAGGT
GAAGAAGCCCTCGAAGAACGCCGCCGCCTTGCAGACCGAAGCCTGA

Upstream 100 bases:

>100_bases
ACGCGCTTCTGTCCACTCTCACTCATACGGCCAAGAACCACGATATGCAGCAGATGCACGCTGCGATCCTGCTTGCCCGT
CAGCCTGTGGAGTCGCTCAA

Downstream 100 bases:

>100_bases
TCCTGGTTGAGGTCCGCCAGGCTGGCAAGCTGCGCAGCACTGGTGGACCGGATCATCCCTGTCCGCCCGTGCAACGGGCA
ATCGTGCGTGACTGACGCGC

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTALLQAPSARSVTTAPVPSRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIRLYKELRGVSPPKGMLPFSTD
WFTTWLPNIHSSLFFSAYQFMVQEGETVGIRAVVAAYRLYLEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGG
QFVTHAYEPHANFVCSLCRPPSRAGKVKKPSKNAAALQTEA

Sequences:

>Translated_201_residues
MTALLQAPSARSVTTAPVPSRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIRLYKELRGVSPPKGMLPFSTD
WFTTWLPNIHSSLFFSAYQFMVQEGETVGIRAVVAAYRLYLEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGG
QFVTHAYEPHANFVCSLCRPPSRAGKVKKPSKNAAALQTEA
>Mature_200_residues
TALLQAPSARSVTTAPVPSRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIRLYKELRGVSPPKGMLPFSTDW
FTTWLPNIHSSLFFSAYQFMVQEGETVGIRAVVAAYRLYLEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGGQ
FVTHAYEPHANFVCSLCRPPSRAGKVKKPSKNAAALQTEA

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=178, Percent_Identity=61.2359550561798, Blast_Score=233, Evalue=9e-63,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 22195; Mature: 22064

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALLQAPSARSVTTAPVPSRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIR
CCCCCCCCCCCCEECCCCCCHHHHHHCCCCHHEEHHEECCCCEEEEEEHHHHHHHHHHHH
LYKELRGVSPPKGMLPFSTDWFTTWLPNIHSSLFFSAYQFMVQEGETVGIRAVVAAYRLY
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGGQFVTHAYEPHANFVCSLCRP
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHEECCCHHHHHHHCCC
PSRAGKVKKPSKNAAALQTEA
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TALLQAPSARSVTTAPVPSRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIR
CCCCCCCCCCCEECCCCCCHHHHHHCCCCHHEEHHEECCCCEEEEEEHHHHHHHHHHHH
LYKELRGVSPPKGMLPFSTDWFTTWLPNIHSSLFFSAYQFMVQEGETVGIRAVVAAYRLY
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGGQFVTHAYEPHANFVCSLCRP
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHEECCCHHHHHHHCCC
PSRAGKVKKPSKNAAALQTEA
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9287017 [H]