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The map label for this gene is ltrA [H]

Identifier: 73539393

GI number: 73539393

Start: 2389516

End: 2390496

Strand: Direct

Name: ltrA [H]

Synonym: Reut_B5571

Alternate gene names: 73539393

Gene position: 2389516-2390496 (Clockwise)

Preceding gene: 73539390

Following gene: 73539396

Centisome position: 87.65

GC content: 66.56

Gene sequence:

>981_bases
ATGTCGCCTGCTGTCTGGAACTACAGCTTGTCAGGGAAACATTGTCCGGTGAACGAAACAATCCAGTGGAATGATTGGGA
GGCGTTCTGCTGCGTGGTCGAGCAGGGCACATTTACGGCAGCGGCGGAGCAGCTCGACTGCCCGAAATCGCGCGTGTCGG
CTGCCGTGGCGCGGCTCGAAACCGCGATCGGCGCGAAGCTGCTGGAGCGCACCACGCGCCGCATGCGGCTCACCGATGCC
GGCAGCGCCGTCTACCGCGATGTCGCGCCATTGTTCGCGCGCCTGCGCGAAATCCGCCAGGAAACGCTCGCGCGCGAGGA
AGGCGTGCAGGGCGTGCTGCGCATCGCCACCCCCTACGAATTCGGCGCGCAGCAGCTTGGCGGCATCATCTGCCGCACGC
TGGCCGCGCATCCGGCGCTCGATGTGTCGGTGGAAATCACGCAAGGCCTTGTCGATCCGATCCGCGACGGGTTTGACGTT
GCTTTCGTGATCGTCGACGCCGACCTGCCCGACTCCGGTACAGTGGCACGCCGCATCTACCACGTGGAGCGCGGTCTCTT
TGTCGCGCCGGCGCTGGCCGCCAGCCTGCCGCCGCTGGCGCGCCCCGAAGACCTCGTCAATATGCCGACGCTCACGACGC
CGGGCGACACGGTATGGGAATTCCAGCGCGACGGCGAAAGCATCACGGTGCCGATCCGGCCGCGCATGCAGACCTACAAC
GCGGAATTGCGGCTGCAGGGCGCGCTGGCGGGACTGGGCATTGCCAAGTTGTCGGTGAACTATTGCGAGGCGGAAATTGC
GCAGGGCCGGCTGGTGCGCGTGTTGCCCGACTATCCGTTGCCGCCGCTGCGCGCGTTCGCGTTGCTGCCGGACCGGCGGC
TGCAGCCGCGCAAGGTGCGCGCGTTCATGGAGGCAATCGAGTCGATGCTGGAGCCCGAACTGGAACAGGACTCCGAGGAA
GGAGCGAGCCCGGCTTTCTGA

Upstream 100 bases:

>100_bases
CGGTAGCCATGGTGGCCTGGCTTGGGGAAGTGGTGGCGCTGTGCGCGACCGGGACGCTGGAAACAGCGGGGACAGACGTT
TGTTGCATCGCTACAGCATA

Downstream 100 bases:

>100_bases
CCGGGCTGCGATGCGGGGGCGTTCAGGGCTGCGGCAAAGGATCAGGCGCCGTCGGTGAAGGCGTCGCGGGATTCCTGCAC
GGTGCGGGCGCCATCGGTGT

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSPAVWNYSLSGKHCPVNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDA
GSAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYEFGAQQLGGIICRTLAAHPALDVSVEITQGLVDPIRDGFDV
AFVIVDADLPDSGTVARRIYHVERGLFVAPALAASLPPLARPEDLVNMPTLTTPGDTVWEFQRDGESITVPIRPRMQTYN
AELRLQGALAGLGIAKLSVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVRAFMEAIESMLEPELEQDSEE
GASPAF

Sequences:

>Translated_326_residues
MSPAVWNYSLSGKHCPVNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDA
GSAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYEFGAQQLGGIICRTLAAHPALDVSVEITQGLVDPIRDGFDV
AFVIVDADLPDSGTVARRIYHVERGLFVAPALAASLPPLARPEDLVNMPTLTTPGDTVWEFQRDGESITVPIRPRMQTYN
AELRLQGALAGLGIAKLSVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVRAFMEAIESMLEPELEQDSEE
GASPAF
>Mature_325_residues
SPAVWNYSLSGKHCPVNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDAG
SAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYEFGAQQLGGIICRTLAAHPALDVSVEITQGLVDPIRDGFDVA
FVIVDADLPDSGTVARRIYHVERGLFVAPALAASLPPLARPEDLVNMPTLTTPGDTVWEFQRDGESITVPIRPRMQTYNA
ELRLQGALAGLGIAKLSVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVRAFMEAIESMLEPELEQDSEEG
ASPAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=310, Percent_Identity=28.0645161290323, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=27.5510204081633, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789639, Length=281, Percent_Identity=29.1814946619217, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=29.4736842105263, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789440, Length=261, Percent_Identity=26.4367816091954, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789173, Length=296, Percent_Identity=25.6756756756757, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=27.9863481228669, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787128, Length=300, Percent_Identity=25.3333333333333, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35894; Mature: 35762

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAVWNYSLSGKHCPVNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLE
CCCCEEEECCCCCCCCCCCCEEECCCEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHH
TAIGAKLLERTTRRMRLTDAGSAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYE
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
FGAQQLGGIICRTLAAHPALDVSVEITQGLVDPIRDGFDVAFVIVDADLPDSGTVARRIY
HHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH
HVERGLFVAPALAASLPPLARPEDLVNMPTLTTPGDTVWEFQRDGESITVPIRPRMQTYN
HHHCCCEEHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCHHCC
AELRLQGALAGLGIAKLSVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVR
CEEEEEEHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCCCCCHHHHH
AFMEAIESMLEPELEQDSEEGASPAF
HHHHHHHHHHCCHHHCCHHCCCCCCC
>Mature Secondary Structure 
SPAVWNYSLSGKHCPVNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLE
CCCEEEECCCCCCCCCCCCEEECCCEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHH
TAIGAKLLERTTRRMRLTDAGSAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYE
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
FGAQQLGGIICRTLAAHPALDVSVEITQGLVDPIRDGFDVAFVIVDADLPDSGTVARRIY
HHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH
HVERGLFVAPALAASLPPLARPEDLVNMPTLTTPGDTVWEFQRDGESITVPIRPRMQTYN
HHHCCCEEHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCHHCC
AELRLQGALAGLGIAKLSVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVR
CEEEEEEHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCCCCCHHHHH
AFMEAIESMLEPELEQDSEEGASPAF
HHHHHHHHHHCCHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]