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The map label for this gene is yqhC [C]

Identifier: 73539353

GI number: 73539353

Start: 2331573

End: 2332367

Strand: Reverse

Name: yqhC [C]

Synonym: Reut_B5531

Alternate gene names: 73539353

Gene position: 2332367-2331573 (Counterclockwise)

Preceding gene: 73539355

Following gene: 73539352

Centisome position: 85.56

GC content: 68.81

Gene sequence:

>795_bases
ATGCGGTTCGGGCCCGGTGCAGCGGGCATCGAGCGTGCCGAGGCGCAGTTCCATGATCACGCGTTCGCCCCGCACCGCCA
CGCCACCTACGCCATTGGCATCACGCTGAGCGGCGTGCAGACATTCCGCTATCGCGGCGAAACCCGCCACTGCCTGCCCG
GGGAATGCCATATCCTGCATCCTGACGAACTGCACGATGGCCGAGCCGGTACGCCCGAGGGCTTCGGCTACCGGATCGTC
TATGTCGATCCGGCGCTGGTGCAGCAGGCGCTGGGCGGACGCGCGCTGCCTTTCGTGCCGGATCCGGTGGTCGGGACGGC
GCGGATCGCGGAGTGCCTCGCCACCGGCGTATGGAACCTTGACGATGCCGTCGACGCGCTGAGCGGCGTGGATATCGTGG
CGTCGGTCACGCAATTGCTGCTCGACGCCGCCGGGCACCCATCCGATGAACGCTCCCGCGCGCTGGCGCTCCCGGCGCTG
ATGCACGTGCGCGAGCTGATCATCGGCGACAGCCAGCGCGAACTCGACATGGAAACGCTGGAGCGGGCCGCGGGCCTCGA
TCGCTGGACTATCGCGCGACAGTTCCGCGTGCTGTTCGGCACCAGCCCGGGGCGCTTCCGTACGCAATGCCAGCTCGCCC
GGGTGCGGGGTCTGCTGATGGAAGGCGCCTCGCTGAGCGCCGCCGCGATCGAGGCGGGATTCGCCGATCAGAGCCATATG
ACGCGGCAGTTCAAAGGCGCTTTCGGGGTGACGCCGGGAAGATGGGTGGAAGCGCTGTCTGGCAGGGCCGGCTGA

Upstream 100 bases:

>100_bases
GTCTCCGGTTAGCGTTAGCATTGGTGCAAGCGTACAAAGCCATGCGGAGACTGTCTTGAACGATTGTGCAGGCGACAGCG
GTGCGCCCCTGCGAAACCGC

Downstream 100 bases:

>100_bases
CCCAACACATGAGGATCCCCGTCCTCGCGAAAAAACCCAAAACCCACTTGTAATGAGATCGATTCCCATTTACTATATCA
TCACTGTCTGACGCAGCAAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcription Regulator; Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Transcriptional Regulator; AraC Family Regulatory Helix-Turn-Helix Protein; AraC/XylS Family Transcription Factor; Transcriptional Regulator Protein AraC Family; AraC Family Regulatory Protein; AraC Type Helix-Turn-Helix- Domain-Containing Protein; L-Rhamnose Operon Transcriptional Activator RhaR; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; HTH-Type Transcriptional Activator RhaS; Transcriptional Regulator Arac Family; AraC Family Regulator; Transcriptional Regulator AraC/XylS Family; AraC-Family Regulatory Protein; Transcription Regulator AraC Family; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Transcriptional Regulator AraC-Family; Arabinose Operon Regulatory Protein; Helix-Turn-Helix AraC-Type Trancriptional Regulator; AraC-Family Protein Transcriptional Regulator; Transcription Regulator; AraC Family Transcription Regulator Protein; HTH-Type Transcriptional Regulator YbfI

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MRFGPGAAGIERAEAQFHDHAFAPHRHATYAIGITLSGVQTFRYRGETRHCLPGECHILHPDELHDGRAGTPEGFGYRIV
YVDPALVQQALGGRALPFVPDPVVGTARIAECLATGVWNLDDAVDALSGVDIVASVTQLLLDAAGHPSDERSRALALPAL
MHVRELIIGDSQRELDMETLERAAGLDRWTIARQFRVLFGTSPGRFRTQCQLARVRGLLMEGASLSAAAIEAGFADQSHM
TRQFKGAFGVTPGRWVEALSGRAG

Sequences:

>Translated_264_residues
MRFGPGAAGIERAEAQFHDHAFAPHRHATYAIGITLSGVQTFRYRGETRHCLPGECHILHPDELHDGRAGTPEGFGYRIV
YVDPALVQQALGGRALPFVPDPVVGTARIAECLATGVWNLDDAVDALSGVDIVASVTQLLLDAAGHPSDERSRALALPAL
MHVRELIIGDSQRELDMETLERAAGLDRWTIARQFRVLFGTSPGRFRTQCQLARVRGLLMEGASLSAAAIEAGFADQSHM
TRQFKGAFGVTPGRWVEALSGRAG
>Mature_264_residues
MRFGPGAAGIERAEAQFHDHAFAPHRHATYAIGITLSGVQTFRYRGETRHCLPGECHILHPDELHDGRAGTPEGFGYRIV
YVDPALVQQALGGRALPFVPDPVVGTARIAECLATGVWNLDDAVDALSGVDIVASVTQLLLDAAGHPSDERSRALALPAL
MHVRELIIGDSQRELDMETLERAAGLDRWTIARQFRVLFGTSPGRFRTQCQLARVRGLLMEGASLSAAAIEAGFADQSHM
TRQFKGAFGVTPGRWVEALSGRAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28514; Mature: 28514

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFGPGAAGIERAEAQFHDHAFAPHRHATYAIGITLSGVQTFRYRGETRHCLPGECHILH
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHCCCCCCCCCCCCEEEEC
PDELHDGRAGTPEGFGYRIVYVDPALVQQALGGRALPFVPDPVVGTARIAECLATGVWNL
CHHCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
DDAVDALSGVDIVASVTQLLLDAAGHPSDERSRALALPALMHVRELIIGDSQRELDMETL
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHH
ERAAGLDRWTIARQFRVLFGTSPGRFRTQCQLARVRGLLMEGASLSAAAIEAGFADQSHM
HHHHCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHH
TRQFKGAFGVTPGRWVEALSGRAG
HHHHCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MRFGPGAAGIERAEAQFHDHAFAPHRHATYAIGITLSGVQTFRYRGETRHCLPGECHILH
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHCCCCCCCCCCCCEEEEC
PDELHDGRAGTPEGFGYRIVYVDPALVQQALGGRALPFVPDPVVGTARIAECLATGVWNL
CHHCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
DDAVDALSGVDIVASVTQLLLDAAGHPSDERSRALALPALMHVRELIIGDSQRELDMETL
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHH
ERAAGLDRWTIARQFRVLFGTSPGRFRTQCQLARVRGLLMEGASLSAAAIEAGFADQSHM
HHHHCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHH
TRQFKGAFGVTPGRWVEALSGRAG
HHHHCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA