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The map label for this gene is ybhD [H]

Identifier: 73539326

GI number: 73539326

Start: 2300355

End: 2301257

Strand: Reverse

Name: ybhD [H]

Synonym: Reut_B5504

Alternate gene names: 73539326

Gene position: 2301257-2300355 (Counterclockwise)

Preceding gene: 73539333

Following gene: 73539319

Centisome position: 84.41

GC content: 66.89

Gene sequence:

>903_bases
ATGAACGTGACCCTGCGGCAGTTGCGCGCCTTTGTCGAAGTCGCTCGCAGTGGCGGCTTTACCGCGGCCGCGCCCAAGCT
TCACCTGACCCAGTCGGCCACGAGCCTGCAGATACGCGAACTGGAATCCCAGCTCGGGCTGCAGCTGATCGACCGCTCTA
CGCGGCGGTTCGCCCTGACCGATGCCGGCAGCGAATTCCTGATCAGTGCCATGCGCATCGTCGGGGATGTCGAGCAGTCG
GTGGCCGATACGCGCGAGCTCGTCCACAAGCGGCGCGGGCGCATCACCGTGGCCACTACGCCGCTGCTGGCGTCGACGTT
GCTGCCGGAGAGCATTGCGCACTTCCTCGACGCCTATCCGGCGATCACTGTGCGCATCGCCGACCTGCCGGCCGAGCAGA
TCGGCCGGCGCGTGCTGAGCGGCGATGTGGATTTCGGCTTTGGCGTGTTTCCGGAAGAGGACCCGCAGTTCGACCGCATT
CCGCTGCTGCGGCATCCGCTCGGCGTGATGGTGCCGAGCAGCTGGCCGCTGGCTACGCGCAAGCGCGATCTGGTGTGGTC
GGACCTGGAAGGCCAACCGCTGATTGCCATGTCGCACGCGACCGGTATGCGCACCCTGATCGACCAGCAACTGCACCAGG
CCGGCGTGCAGGTCAATCCGCGTTTCGAAGTCGCGTATCTTGGAACGGCCGTAGGCCTGGCCGAGGCAGGCCTTGGCGTG
ACGGTAGTGCCCGCCTATGTCGGCAAGCTGATGGGATCGGACCGCGTGCGCTTCCGGCCGCTGCACAAGCCCGTGGTGCA
CCGGCAGATCGAACTGATCGTGCGCGCGGGGCGCTCGCTGTCACCGAGCGCCGCGGCGTTCCGCGATTGTTTGGCGGCGC
GCTGCAAGATGCTGAACGGCTGA

Upstream 100 bases:

>100_bases
TTCACGCGATGTTGCGAACCGGTGACACGCCGGCCGCAAGCTGCGGCACATCCGCTATGCTCCGGAACCAGTCAATCCGG
CAGATTCATAAGAACCGCAT

Downstream 100 bases:

>100_bases
TGCCGGCTTGTTGACCGACCGGCCGAGGTCAGACAGCGTTGCTCTCCGCGTCGAGCCTGAAGAACCGGCTCGCGTTGTCC
GCGAGAATCTTCCGCTTCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNVTLRQLRAFVEVARSGGFTAAAPKLHLTQSATSLQIRELESQLGLQLIDRSTRRFALTDAGSEFLISAMRIVGDVEQS
VADTRELVHKRRGRITVATTPLLASTLLPESIAHFLDAYPAITVRIADLPAEQIGRRVLSGDVDFGFGVFPEEDPQFDRI
PLLRHPLGVMVPSSWPLATRKRDLVWSDLEGQPLIAMSHATGMRTLIDQQLHQAGVQVNPRFEVAYLGTAVGLAEAGLGV
TVVPAYVGKLMGSDRVRFRPLHKPVVHRQIELIVRAGRSLSPSAAAFRDCLAARCKMLNG

Sequences:

>Translated_300_residues
MNVTLRQLRAFVEVARSGGFTAAAPKLHLTQSATSLQIRELESQLGLQLIDRSTRRFALTDAGSEFLISAMRIVGDVEQS
VADTRELVHKRRGRITVATTPLLASTLLPESIAHFLDAYPAITVRIADLPAEQIGRRVLSGDVDFGFGVFPEEDPQFDRI
PLLRHPLGVMVPSSWPLATRKRDLVWSDLEGQPLIAMSHATGMRTLIDQQLHQAGVQVNPRFEVAYLGTAVGLAEAGLGV
TVVPAYVGKLMGSDRVRFRPLHKPVVHRQIELIVRAGRSLSPSAAAFRDCLAARCKMLNG
>Mature_300_residues
MNVTLRQLRAFVEVARSGGFTAAAPKLHLTQSATSLQIRELESQLGLQLIDRSTRRFALTDAGSEFLISAMRIVGDVEQS
VADTRELVHKRRGRITVATTPLLASTLLPESIAHFLDAYPAITVRIADLPAEQIGRRVLSGDVDFGFGVFPEEDPQFDRI
PLLRHPLGVMVPSSWPLATRKRDLVWSDLEGQPLIAMSHATGMRTLIDQQLHQAGVQVNPRFEVAYLGTAVGLAEAGLGV
TVVPAYVGKLMGSDRVRFRPLHKPVVHRQIELIVRAGRSLSPSAAAFRDCLAARCKMLNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=32.0557491289199, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=33.4470989761092, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI157672245, Length=298, Percent_Identity=29.1946308724832, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788887, Length=259, Percent_Identity=30.8880308880309, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788481, Length=247, Percent_Identity=29.9595141700405, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=26.4214046822742, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=25.2559726962457, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787806, Length=281, Percent_Identity=25.2669039145907, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787601, Length=178, Percent_Identity=29.2134831460674, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789204, Length=276, Percent_Identity=25.7246376811594, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788296, Length=217, Percent_Identity=27.6497695852535, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=26.6393442622951, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789173, Length=152, Percent_Identity=34.8684210526316, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787589, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786401, Length=127, Percent_Identity=31.496062992126, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081904, Length=226, Percent_Identity=27.4336283185841, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=128, Percent_Identity=28.125, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32839; Mature: 32839

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLRQLRAFVEVARSGGFTAAAPKLHLTQSATSLQIRELESQLGLQLIDRSTRRFALT
CCCHHHHHHHHHHHHHCCCCEECCCCEEEECCCHHHHHHHHHHHHCHHHHHCCCCEEEEE
DAGSEFLISAMRIVGDVEQSVADTRELVHKRRGRITVATTPLLASTLLPESIAHFLDAYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCC
AITVRIADLPAEQIGRRVLSGDVDFGFGVFPEEDPQFDRIPLLRHPLGVMVPSSWPLATR
EEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCCCCCCCCC
KRDLVWSDLEGQPLIAMSHATGMRTLIDQQLHQAGVQVNPRFEVAYLGTAVGLAEAGLGV
CCCCEEECCCCCCEEEECCCCHHHHHHHHHHHHCCCEECCCEEEEEHHHHHHHHHCCCCE
TVVPAYVGKLMGSDRVRFRPLHKPVVHRQIELIVRAGRSLSPSAAAFRDCLAARCKMLNG
EEHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNVTLRQLRAFVEVARSGGFTAAAPKLHLTQSATSLQIRELESQLGLQLIDRSTRRFALT
CCCHHHHHHHHHHHHHCCCCEECCCCEEEECCCHHHHHHHHHHHHCHHHHHCCCCEEEEE
DAGSEFLISAMRIVGDVEQSVADTRELVHKRRGRITVATTPLLASTLLPESIAHFLDAYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCC
AITVRIADLPAEQIGRRVLSGDVDFGFGVFPEEDPQFDRIPLLRHPLGVMVPSSWPLATR
EEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCCCCCCCCC
KRDLVWSDLEGQPLIAMSHATGMRTLIDQQLHQAGVQVNPRFEVAYLGTAVGLAEAGLGV
CCCCEEECCCCCCEEEECCCCHHHHHHHHHHHHCCCEECCCEEEEEHHHHHHHHHCCCCE
TVVPAYVGKLMGSDRVRFRPLHKPVVHRQIELIVRAGRSLSPSAAAFRDCLAARCKMLNG
EEHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]