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The map label for this gene is yncD [C]

Identifier: 73539244

GI number: 73539244

Start: 2210294

End: 2212606

Strand: Reverse

Name: yncD [C]

Synonym: Reut_B5422

Alternate gene names: 73539244

Gene position: 2212606-2210294 (Counterclockwise)

Preceding gene: 73539246

Following gene: 73539243

Centisome position: 81.16

GC content: 69.52

Gene sequence:

>2313_bases
ATGGCCCGACGCCGTTGCCGCACCCGTCCGCTGCGGGTGGTGCCGTGCCTGAGCGCGCTGGCACTGTCCGCGCCCGGGTC
CGCGGCGGCGCAGCAGGCTACCGGCGAAGCGGCCGCTGACCAGGTCCGCAACCTGCAGGAGGTCACAGTCGTCGCACCCA
CCCCGTTACCGGGCTTCACCATCGAGCGACAGGCCTTTGCCGGCAATGCGCAAACCGCCACCGACGGCGACCTCGAGCGC
GTGAAGGCGCCCAACCTGACAAGCTTTCTGGCGGAGACCATGACTGGCGTAGTGGTCAACGACGCGCAGGGCAACCCGTT
CGCGCAGGACCTGCTCTATCGCGGCTACCGGCTGTCGCCCACGCTGGGGTCGGCGCAGGGCCTTTCGCTATACCTGGACG
GCGTACGCCAGAACGCCGCGCTGGGCGACGTGATCCAGTGGGCAGCCATCCCCGAAGCTGCGCTCAGCACCATCACGCTG
GTGCCAGGCAGCAACCCGCTCTACGGGCTCAATACGCTGGGCGGCGCGCTCGCGCTCCAGACCAAGTCCGGCGAAACCCA
TCCGGGTGTGGAAGCCGACCTGAGCATCGGCAGCTACGGGCGCGCGCGCCTGGACGTCAGCGCCGGCAAGGCGCTGGGCG
ACGGCTGGCACGCCTACATGGCAGGCACGGGATGGCGCGAGGACGGCTGGCGCGACCGCTCGGACAGCGACCTGGGCAAC
CTGTTCTTCAAGCTGGGCCGCTCGACCAGCGGTACGCAATGGAACGTGAGCGTACTGGGCAGCAGCAGCCGGCTGTCCGG
CAATGGCCTGACACCGGACAGCCTCTACGCCGCCGATCGCCGCGCGATCTACACCGCGCCCGACGAGACGCGGTCGCGCT
CGCTGCAGGTCGTGCTCAACGGTGCGCACCAGTTCAACGCGCAGGACCAGCTTCAGCTCACGCTGTACCTGCGGCAGACC
CGCACGCACGCCAACAGCGGCGACATCAGCGATGCCTACCTCGACACCGTGCTCGATTGCCAGGGCCAGGCCGGGAGCGG
CGATTGCGAGGCCGACGATGCGCCGCCCAACGCCGTGCTCAACAGCGCCACGGTGCGGGAAACGGGCTATGGGGCCTCGG
CGCAGTGGTCGCATGATGGCGATACCCACCGTTTTGCGTTCGGTGCGGCGCTCGACCTGAACCGCTCGCACTATACGCAG
ACCACGCAGCAGGCCAGCTTCGACAGCGCCCGCAATGCCGTGGCCGATGCCGGCGCGCCGGTAGTGACCCAAGCCGCGCT
GGACGGCCGCGACAGCACGGTCGGGCTGTTTGCCACCGACACCATGCGCCTGCTGGAAGGCACCTTCCTGACGCTGGCGG
CGCGGTGGAACCAGGGCCGTCGCCACACGCTGCTCAATCTCCCTACGCAGTCCGACGAGAGCTTCACCTACTCGAAGCTA
AACCCTTCCGTTGGCCTCACGCACCGGTTGCTGGACCGGCTGGTGGTGTTCGGCTCGGCGTCGCAGGGCACGCGCATGCC
GACGGCCATCGAGCTCGGCTGTGCCGATCCCGCCAACGCGTGCCAGCTTCCCACCGGATTGCAAGCGGACCCATTTCTGC
GCCAGGTCGTCACCCGCACGCTGGAATTTGGCGGACGCTGGCAGCCCGCCGATGCCACCGAGGTCACGCTGGCGCTGTAC
CGCAGCGACAACCGCGACGACATCGTGTTCCAGCGCTCTCCGGTCAGCCCGCTCGGGTACTTCTCCAACTTCCCCAAGAC
CCGCAACGAAGGCGTGGAACTGGGGCTGCGCCAACGTCTTGGCCGCCTGACACTGCGCGCGGGCTACAGCTACACGCGCG
CGACTTACCAGGCGCAGGGCGAGCTGCAGACGCCGTTTGCGGCGCCCGTGGCGGTACAGCCCGGCACGCGCATGGCCGGG
ATCCCGCTGCACAGCTTCAGGCTCGGCGCCGACTGGCGCGCCACAGCGGCGCTCAGTGTCGGCGGCGACCTGCTGGTGTC
GTCGTCGCGCCCGGTCGCCGGCAACGAGGACGGCGCGCTGAGCGCGCAGAACCCGGCGCTGTCCGATACCGGCGGCTACC
TGCTGCTGAACCTGCGCGCGAGCTGGCAGTTCTCGCCGCGCTGGCAGGTCTATGGCCGCATCGACAATGTGTTCGACCGG
CGCTACGCCACCTATGGCCAGGCCGGCTATAACCTGTTCGCAGGCGGATCGCTGCTGCAGCCGGGCGCGGCAGTGCCGGT
GGAGCGCTTTGTCGCGCCCGGTGCGCCGCGCCTGTTCCTGGTCGGCGTGCGCTACGAATGGGACGGCCGCTGA

Upstream 100 bases:

>100_bases
CTTGGCAGTACCGGACCGCTGGACTAGATTAGGTAGCATTTGCGCCACTCGAAGTCATCCGCGACCGTGCCTGCGCGACG
CAGCGCAACAAGGGGACCCC

Downstream 100 bases:

>100_bases
CCGACGTTGCCCGATTCACGTGAAAGGAACCGCCATGACATTGCCATCGACATCCTTGCGCGCAGCCACCGTGCTGGCGC
TTGCCTCGGTGCTGGCCGGA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor YncD; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; NB-Dependent Siderophore Receptor; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 770; Mature: 769

Protein sequence:

>770_residues
MARRRCRTRPLRVVPCLSALALSAPGSAAAQQATGEAAADQVRNLQEVTVVAPTPLPGFTIERQAFAGNAQTATDGDLER
VKAPNLTSFLAETMTGVVVNDAQGNPFAQDLLYRGYRLSPTLGSAQGLSLYLDGVRQNAALGDVIQWAAIPEAALSTITL
VPGSNPLYGLNTLGGALALQTKSGETHPGVEADLSIGSYGRARLDVSAGKALGDGWHAYMAGTGWREDGWRDRSDSDLGN
LFFKLGRSTSGTQWNVSVLGSSSRLSGNGLTPDSLYAADRRAIYTAPDETRSRSLQVVLNGAHQFNAQDQLQLTLYLRQT
RTHANSGDISDAYLDTVLDCQGQAGSGDCEADDAPPNAVLNSATVRETGYGASAQWSHDGDTHRFAFGAALDLNRSHYTQ
TTQQASFDSARNAVADAGAPVVTQAALDGRDSTVGLFATDTMRLLEGTFLTLAARWNQGRRHTLLNLPTQSDESFTYSKL
NPSVGLTHRLLDRLVVFGSASQGTRMPTAIELGCADPANACQLPTGLQADPFLRQVVTRTLEFGGRWQPADATEVTLALY
RSDNRDDIVFQRSPVSPLGYFSNFPKTRNEGVELGLRQRLGRLTLRAGYSYTRATYQAQGELQTPFAAPVAVQPGTRMAG
IPLHSFRLGADWRATAALSVGGDLLVSSSRPVAGNEDGALSAQNPALSDTGGYLLLNLRASWQFSPRWQVYGRIDNVFDR
RYATYGQAGYNLFAGGSLLQPGAAVPVERFVAPGAPRLFLVGVRYEWDGR

Sequences:

>Translated_770_residues
MARRRCRTRPLRVVPCLSALALSAPGSAAAQQATGEAAADQVRNLQEVTVVAPTPLPGFTIERQAFAGNAQTATDGDLER
VKAPNLTSFLAETMTGVVVNDAQGNPFAQDLLYRGYRLSPTLGSAQGLSLYLDGVRQNAALGDVIQWAAIPEAALSTITL
VPGSNPLYGLNTLGGALALQTKSGETHPGVEADLSIGSYGRARLDVSAGKALGDGWHAYMAGTGWREDGWRDRSDSDLGN
LFFKLGRSTSGTQWNVSVLGSSSRLSGNGLTPDSLYAADRRAIYTAPDETRSRSLQVVLNGAHQFNAQDQLQLTLYLRQT
RTHANSGDISDAYLDTVLDCQGQAGSGDCEADDAPPNAVLNSATVRETGYGASAQWSHDGDTHRFAFGAALDLNRSHYTQ
TTQQASFDSARNAVADAGAPVVTQAALDGRDSTVGLFATDTMRLLEGTFLTLAARWNQGRRHTLLNLPTQSDESFTYSKL
NPSVGLTHRLLDRLVVFGSASQGTRMPTAIELGCADPANACQLPTGLQADPFLRQVVTRTLEFGGRWQPADATEVTLALY
RSDNRDDIVFQRSPVSPLGYFSNFPKTRNEGVELGLRQRLGRLTLRAGYSYTRATYQAQGELQTPFAAPVAVQPGTRMAG
IPLHSFRLGADWRATAALSVGGDLLVSSSRPVAGNEDGALSAQNPALSDTGGYLLLNLRASWQFSPRWQVYGRIDNVFDR
RYATYGQAGYNLFAGGSLLQPGAAVPVERFVAPGAPRLFLVGVRYEWDGR
>Mature_769_residues
ARRRCRTRPLRVVPCLSALALSAPGSAAAQQATGEAAADQVRNLQEVTVVAPTPLPGFTIERQAFAGNAQTATDGDLERV
KAPNLTSFLAETMTGVVVNDAQGNPFAQDLLYRGYRLSPTLGSAQGLSLYLDGVRQNAALGDVIQWAAIPEAALSTITLV
PGSNPLYGLNTLGGALALQTKSGETHPGVEADLSIGSYGRARLDVSAGKALGDGWHAYMAGTGWREDGWRDRSDSDLGNL
FFKLGRSTSGTQWNVSVLGSSSRLSGNGLTPDSLYAADRRAIYTAPDETRSRSLQVVLNGAHQFNAQDQLQLTLYLRQTR
THANSGDISDAYLDTVLDCQGQAGSGDCEADDAPPNAVLNSATVRETGYGASAQWSHDGDTHRFAFGAALDLNRSHYTQT
TQQASFDSARNAVADAGAPVVTQAALDGRDSTVGLFATDTMRLLEGTFLTLAARWNQGRRHTLLNLPTQSDESFTYSKLN
PSVGLTHRLLDRLVVFGSASQGTRMPTAIELGCADPANACQLPTGLQADPFLRQVVTRTLEFGGRWQPADATEVTLALYR
SDNRDDIVFQRSPVSPLGYFSNFPKTRNEGVELGLRQRLGRLTLRAGYSYTRATYQAQGELQTPFAAPVAVQPGTRMAGI
PLHSFRLGADWRATAALSVGGDLLVSSSRPVAGNEDGALSAQNPALSDTGGYLLLNLRASWQFSPRWQVYGRIDNVFDRR
YATYGQAGYNLFAGGSLLQPGAAVPVERFVAPGAPRLFLVGVRYEWDGR

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787723, Length=734, Percent_Identity=22.8882833787466, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82501; Mature: 82370

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRRCRTRPLRVVPCLSALALSAPGSAAAQQATGEAAADQVRNLQEVTVVAPTPLPGFT
CCCCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCEEEEEEECCCCCCCE
IERQAFAGNAQTATDGDLERVKAPNLTSFLAETMTGVVVNDAQGNPFAQDLLYRGYRLSP
EEHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHCCEEECC
TLGSAQGLSLYLDGVRQNAALGDVIQWAAIPEAALSTITLVPGSNPLYGLNTLGGALALQ
CCCCCCCCEEEEECHHCCCHHHHHHHHHHCCHHHHCEEEEECCCCCCEEHHCCCCEEEEE
TKSGETHPGVEADLSIGSYGRARLDVSAGKALGDGWHAYMAGTGWREDGWRDRSDSDLGN
ECCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
LFFKLGRSTSGTQWNVSVLGSSSRLSGNGLTPDSLYAADRRAIYTAPDETRSRSLQVVLN
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCEEEECCCHHHCCEEEEEEE
GAHQFNAQDQLQLTLYLRQTRTHANSGDISDAYLDTVLDCQGQAGSGDCEADDAPPNAVL
CCHHCCCCCCEEEEEEEEEHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
NSATVRETGYGASAQWSHDGDTHRFAFGAALDLNRSHYTQTTQQASFDSARNAVADAGAP
CCCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHCHHHHHHHHHHHHHHHCCCCC
VVTQAALDGRDSTVGLFATDTMRLLEGTFLTLAARWNQGRRHTLLNLPTQSDESFTYSKL
EEEEHHCCCCCCEEEEEEHHHHHHHCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEC
NPSVGLTHRLLDRLVVFGSASQGTRMPTAIELGCADPANACQLPTGLQADPFLRQVVTRT
CCCCCHHHHHHHHHHEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
LEFGGRWQPADATEVTLALYRSDNRDDIVFQRSPVSPLGYFSNFPKTRNEGVELGLRQRL
HHCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHH
GRLTLRAGYSYTRATYQAQGELQTPFAAPVAVQPGTRMAGIPLHSFRLGADWRATAALSV
CCEEEECCCCEEEEEEEECCCCCCCCCCCEEECCCCCEECCCHHHEEECCCCCEEEEEEC
GGDLLVSSSRPVAGNEDGALSAQNPALSDTGGYLLLNLRASWQFSPRWQVYGRIDNVFDR
CCEEEEECCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECEECCCCEEEEECHHHHHHH
RYATYGQAGYNLFAGGSLLQPGAAVPVERFVAPGAPRLFLVGVRYEWDGR
HHHHCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEEEECCCC
>Mature Secondary Structure 
ARRRCRTRPLRVVPCLSALALSAPGSAAAQQATGEAAADQVRNLQEVTVVAPTPLPGFT
CCCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCEEEEEEECCCCCCCE
IERQAFAGNAQTATDGDLERVKAPNLTSFLAETMTGVVVNDAQGNPFAQDLLYRGYRLSP
EEHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHCCEEECC
TLGSAQGLSLYLDGVRQNAALGDVIQWAAIPEAALSTITLVPGSNPLYGLNTLGGALALQ
CCCCCCCCEEEEECHHCCCHHHHHHHHHHCCHHHHCEEEEECCCCCCEEHHCCCCEEEEE
TKSGETHPGVEADLSIGSYGRARLDVSAGKALGDGWHAYMAGTGWREDGWRDRSDSDLGN
ECCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
LFFKLGRSTSGTQWNVSVLGSSSRLSGNGLTPDSLYAADRRAIYTAPDETRSRSLQVVLN
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCEEEECCCHHHCCEEEEEEE
GAHQFNAQDQLQLTLYLRQTRTHANSGDISDAYLDTVLDCQGQAGSGDCEADDAPPNAVL
CCHHCCCCCCEEEEEEEEEHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
NSATVRETGYGASAQWSHDGDTHRFAFGAALDLNRSHYTQTTQQASFDSARNAVADAGAP
CCCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHCHHHHHHHHHHHHHHHCCCCC
VVTQAALDGRDSTVGLFATDTMRLLEGTFLTLAARWNQGRRHTLLNLPTQSDESFTYSKL
EEEEHHCCCCCCEEEEEEHHHHHHHCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEC
NPSVGLTHRLLDRLVVFGSASQGTRMPTAIELGCADPANACQLPTGLQADPFLRQVVTRT
CCCCCHHHHHHHHHHEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
LEFGGRWQPADATEVTLALYRSDNRDDIVFQRSPVSPLGYFSNFPKTRNEGVELGLRQRL
HHCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHH
GRLTLRAGYSYTRATYQAQGELQTPFAAPVAVQPGTRMAGIPLHSFRLGADWRATAALSV
CCEEEECCCCEEEEEEEECCCCCCCCCCCEEECCCCCEECCCHHHEEECCCCCEEEEEEC
GGDLLVSSSRPVAGNEDGALSAQNPALSDTGGYLLLNLRASWQFSPRWQVYGRIDNVFDR
CCEEEEECCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECEECCCCEEEEECHHHHHHH
RYATYGQAGYNLFAGGSLLQPGAAVPVERFVAPGAPRLFLVGVRYEWDGR
HHHHCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA