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The map label for this gene is pecT [H]

Identifier: 73539206

GI number: 73539206

Start: 2168918

End: 2169820

Strand: Direct

Name: pecT [H]

Synonym: Reut_B5384

Alternate gene names: 73539206

Gene position: 2168918-2169820 (Clockwise)

Preceding gene: 73539200

Following gene: 73539207

Centisome position: 79.56

GC content: 68.44

Gene sequence:

>903_bases
GTGCATGACGCCCGCCTCGATCCTGCGTTGCTCCAGAGCTTTGTCGCCGTTGCGGAAAGCGGCAGCTTTACGCGCGCGGC
GCAGCGCGTGCACCTGACCCAATCGACGGTGAGCCAGCAAGTGCGGCGGCTGGAAGAACAGCTTGGCTGCGAACTGCTCG
ACCGGGGCGGCCGCTACGTCACCACCACGCCCGAGGGCGAGCGGCTGCTCGGCTACGCGCGGCGCTTGCAGCAGCTGATG
GCCGAGGCGGTGGAACAGGTGCGCCAGACTTCAGGCCAGGGCGAGATCCGGCTGGGGGTGCCCGAGGATTTTGCGGCGCA
GCCACTGACGGCGGTGCTGGCCGGGTTTGCCGATACTTGGCCCGGTATCCGGTTGGAAGTGACCAGCGGGTTGAGCCATG
AACTTTGGCAACGTTTCCAGGATAGCGAACTGGACCTGGCGCTGGTCAAGCAGCGCGTGGGCCATGCCGCCGGCGTGGTG
TGCTGGCCCGAGCCGCTGGCGTGGATAGACAGCCGCACGCGTCCGGCCTTGGCGCGCGATCCGGTGCCATTGGTGGCATT
CCCGAGCGGTGGCCTCTACCGCGGCGAGATGACGCATGCGCTCGATGCGAGCGGACGCCGCTGGCGCATCGGCTTCGTCA
GTGCGAGCCTCGCCAGCATCAGCTCAGCGGTGGCCGACGGCCTTGGCATCAGCCTGCTGCCGCGCCGGCTGGCTTCGGCG
GCACACCGGCTGCTCGATGACGAACCATGGCTCGGCGCAGTGCCAGCCATCGAACTGACACTACATGCCCAGCCCGAGCC
GTCTGCCGCCGCGCGCGACATGATGGGGCGCCTGATCGCGCTGTGCGACCAGGCCATGGGCGCAAACGGCACCCATGGAT
CAAGCGGGGAATCGCTCAGCTGA

Upstream 100 bases:

>100_bases
TAGGCGTGACAGGGACAGTCGCCAATCTACGCCCGGCCTTTGCAATTGGGAAATTAAATGATGAAATCGTCAGTAGTGGA
AAACCAAATACCTGACCGCC

Downstream 100 bases:

>100_bases
AGAATTCGCGGAAGTACTGCGTGCAGGTGCCGGCCTGGCGGAAGGTATACGGCAGTTCAACCATGGCGGCGGCGTCCAGC
GACCCGAACGGAATGTCCAG

Product: regulatory protein LysR

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MHDARLDPALLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEEQLGCELLDRGGRYVTTTPEGERLLGYARRLQQLM
AEAVEQVRQTSGQGEIRLGVPEDFAAQPLTAVLAGFADTWPGIRLEVTSGLSHELWQRFQDSELDLALVKQRVGHAAGVV
CWPEPLAWIDSRTRPALARDPVPLVAFPSGGLYRGEMTHALDASGRRWRIGFVSASLASISSAVADGLGISLLPRRLASA
AHRLLDDEPWLGAVPAIELTLHAQPEPSAAARDMMGRLIALCDQAMGANGTHGSSGESLS

Sequences:

>Translated_300_residues
MHDARLDPALLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEEQLGCELLDRGGRYVTTTPEGERLLGYARRLQQLM
AEAVEQVRQTSGQGEIRLGVPEDFAAQPLTAVLAGFADTWPGIRLEVTSGLSHELWQRFQDSELDLALVKQRVGHAAGVV
CWPEPLAWIDSRTRPALARDPVPLVAFPSGGLYRGEMTHALDASGRRWRIGFVSASLASISSAVADGLGISLLPRRLASA
AHRLLDDEPWLGAVPAIELTLHAQPEPSAAARDMMGRLIALCDQAMGANGTHGSSGESLS
>Mature_300_residues
MHDARLDPALLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEEQLGCELLDRGGRYVTTTPEGERLLGYARRLQQLM
AEAVEQVRQTSGQGEIRLGVPEDFAAQPLTAVLAGFADTWPGIRLEVTSGLSHELWQRFQDSELDLALVKQRVGHAAGVV
CWPEPLAWIDSRTRPALARDPVPLVAFPSGGLYRGEMTHALDASGRRWRIGFVSASLASISSAVADGLGISLLPRRLASA
AHRLLDDEPWLGAVPAIELTLHAQPEPSAAARDMMGRLIALCDQAMGANGTHGSSGESLS

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=261, Percent_Identity=29.8850574712644, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787806, Length=238, Percent_Identity=28.1512605042017, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=243, Percent_Identity=28.8065843621399, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=238, Percent_Identity=30.2521008403361, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787589, Length=153, Percent_Identity=35.2941176470588, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693193, Length=124, Percent_Identity=37.9032258064516, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=235, Percent_Identity=26.3829787234043, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=239, Percent_Identity=30.1255230125523, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786713, Length=146, Percent_Identity=28.7671232876712, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=297, Percent_Identity=28.2828282828283, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994962, Length=149, Percent_Identity=30.8724832214765, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790262, Length=139, Percent_Identity=30.2158273381295, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693105, Length=237, Percent_Identity=24.4725738396624, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786401, Length=143, Percent_Identity=34.2657342657343, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788887, Length=282, Percent_Identity=25.886524822695, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787601, Length=240, Percent_Identity=25.4166666666667, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787530, Length=238, Percent_Identity=23.5294117647059, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=140, Percent_Identity=31.4285714285714, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789173, Length=117, Percent_Identity=31.6239316239316, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788296, Length=234, Percent_Identity=25.2136752136752, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788748, Length=236, Percent_Identity=26.6949152542373, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=26.2096774193548, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787949, Length=277, Percent_Identity=25.9927797833935, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32339; Mature: 32339

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDARLDPALLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEEQLGCELLDRGGRYV
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEE
TTTPEGERLLGYARRLQQLMAEAVEQVRQTSGQGEIRLGVPEDFAAQPLTAVLAGFADTW
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC
PGIRLEVTSGLSHELWQRFQDSELDLALVKQRVGHAAGVVCWPEPLAWIDSRTRPALARD
CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCHHHHCCCCCCCCCCC
PVPLVAFPSGGLYRGEMTHALDASGRRWRIGFVSASLASISSAVADGLGISLLPRRLASA
CCCEEEECCCCEECCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AHRLLDDEPWLGAVPAIELTLHAQPEPSAAARDMMGRLIALCDQAMGANGTHGSSGESLS
HHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MHDARLDPALLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEEQLGCELLDRGGRYV
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEE
TTTPEGERLLGYARRLQQLMAEAVEQVRQTSGQGEIRLGVPEDFAAQPLTAVLAGFADTW
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC
PGIRLEVTSGLSHELWQRFQDSELDLALVKQRVGHAAGVVCWPEPLAWIDSRTRPALARD
CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCHHHHCCCCCCCCCCC
PVPLVAFPSGGLYRGEMTHALDASGRRWRIGFVSASLASISSAVADGLGISLLPRRLASA
CCCEEEECCCCEECCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AHRLLDDEPWLGAVPAIELTLHAQPEPSAAARDMMGRLIALCDQAMGANGTHGSSGESLS
HHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]