Click here to switch to the map view.

The map label for this gene is lpxD [H]

Identifier: 73539189

GI number: 73539189

Start: 2146128

End: 2146796

Strand: Reverse

Name: lpxD [H]

Synonym: Reut_B5367

Alternate gene names: 73539189

Gene position: 2146796-2146128 (Counterclockwise)

Preceding gene: 73539190

Following gene: 73539186

Centisome position: 78.75

GC content: 61.88

Gene sequence:

>669_bases
ATGCCACTCATCACTGCAACCTCAGTGGCCTCCATTGTGATAGCCGGGGCCGGCGGCCTGGGCCTGGAGCTCTTTGATTA
CCTGGACAGGGAAGCCCTGGATGGCGGACCGCCGGTGGTCGGCTTTATTGACGACACGCCTGGCAAGGTGCCGGATGGCG
TGAACCGGCCCAACCTCGGCCCGATCCGGCAGTTCGTTGCCGCGCCACAGCAAGGCGTCATGGTCGCAATTGGTTCACCC
GCAGCACGTCAAGACGTATTCCGCTGGCTATTGCAACAACGCGTCATGATGCCGTCATATGTCCATGCCACGGCTTTGGT
TTCAACATCTTCCCGTCTGGGCATGGCCGCGTTGATCTTCCCGTTTACCGTCGTGAGCCGCGATGCGACGGTGGAGGACG
GCGTGGTAGCCAACGCGTTCTGCGGAATCGGGCATGGGGCTTCTGTCGGTCCCTGCTCGGTGCTTTCCCCTCATGTCGTG
CTGAATGGCAATTCCTCCGTCGGACCCGGCTGCTTCTTGGGTACCCGCGCGACCCTGTATCCCGGCGTCAAGATCGGCGC
CGAATGCACGGTGGACTCTCACACGGGCGTGTCATCCAACGTCAAGGACCGGCAGTTCGTCACGTCGGGGGCTTACCAGA
TTGCATCACGCCGTCTTCGGGACGAATAG

Upstream 100 bases:

>100_bases
GTCGTCGTGTGCCTGGTGGAATAGGCAGAACGAAGATTTTGTATAGGTCCCCCGCCGGAGCCCTCCCAGGGCCCCGGTGA
CTGACGAAGGCGAGGTCGCC

Downstream 100 bases:

>100_bases
GACTGCCACCTGTCCCGCGATACTGGCATCTGCGTCAGGCGCTGCTAGGAACGTAGACGCCACTGGACACTAATGGTGAC
GACGGTTGCACCGGAGATCG

Product: hexapaptide repeat-containing transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MPLITATSVASIVIAGAGGLGLELFDYLDREALDGGPPVVGFIDDTPGKVPDGVNRPNLGPIRQFVAAPQQGVMVAIGSP
AARQDVFRWLLQQRVMMPSYVHATALVSTSSRLGMAALIFPFTVVSRDATVEDGVVANAFCGIGHGASVGPCSVLSPHVV
LNGNSSVGPGCFLGTRATLYPGVKIGAECTVDSHTGVSSNVKDRQFVTSGAYQIASRRLRDE

Sequences:

>Translated_222_residues
MPLITATSVASIVIAGAGGLGLELFDYLDREALDGGPPVVGFIDDTPGKVPDGVNRPNLGPIRQFVAAPQQGVMVAIGSP
AARQDVFRWLLQQRVMMPSYVHATALVSTSSRLGMAALIFPFTVVSRDATVEDGVVANAFCGIGHGASVGPCSVLSPHVV
LNGNSSVGPGCFLGTRATLYPGVKIGAECTVDSHTGVSSNVKDRQFVTSGAYQIASRRLRDE
>Mature_221_residues
PLITATSVASIVIAGAGGLGLELFDYLDREALDGGPPVVGFIDDTPGKVPDGVNRPNLGPIRQFVAAPQQGVMVAIGSPA
ARQDVFRWLLQQRVMMPSYVHATALVSTSSRLGMAALIFPFTVVSRDATVEDGVVANAFCGIGHGASVGPCSVLSPHVVL
NGNSSVGPGCFLGTRATLYPGVKIGAECTVDSHTGVSSNVKDRQFVTSGAYQIASRRLRDE

Specific function: Unknown

COG id: COG0110

COG function: function code R; Acetyltransferase (isoleucine patch superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family. LpxD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018357
- InterPro:   IPR011004
- InterPro:   IPR007691
- InterPro:   IPR020573 [H]

Pfam domain/function: PF04613 LpxD [H]

EC number: NA

Molecular weight: Translated: 23066; Mature: 22934

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLITATSVASIVIAGAGGLGLELFDYLDREALDGGPPVVGFIDDTPGKVPDGVNRPNLG
CCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCH
PIRQFVAAPQQGVMVAIGSPAARQDVFRWLLQQRVMMPSYVHATALVSTSSRLGMAALIF
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
PFTVVSRDATVEDGVVANAFCGIGHGASVGPCSVLSPHVVLNGNSSVGPGCFLGTRATLY
HHHHHCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCHHCC
PGVKIGAECTVDSHTGVSSNVKDRQFVTSGAYQIASRRLRDE
CCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLITATSVASIVIAGAGGLGLELFDYLDREALDGGPPVVGFIDDTPGKVPDGVNRPNLG
CCCCHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCH
PIRQFVAAPQQGVMVAIGSPAARQDVFRWLLQQRVMMPSYVHATALVSTSSRLGMAALIF
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
PFTVVSRDATVEDGVVANAFCGIGHGASVGPCSVLSPHVVLNGNSSVGPGCFLGTRATLY
HHHHHCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCHHCC
PGVKIGAECTVDSHTGVSSNVKDRQFVTSGAYQIASRRLRDE
CCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA