Click here to switch to the map view.

The map label for this gene is rfbE [H]

Identifier: 73539169

GI number: 73539169

Start: 2121475

End: 2122743

Strand: Direct

Name: rfbE [H]

Synonym: Reut_B5347

Alternate gene names: 73539169

Gene position: 2121475-2122743 (Clockwise)

Preceding gene: 73539168

Following gene: 73539170

Centisome position: 77.82

GC content: 54.61

Gene sequence:

>1269_bases
ATGCGGCTATCCCATATTTCGTGGAATCTGGCTGGATTAACGCTCCCATTACTCGTCGCAGCTGTCACGGTCCCGCAACT
CATACAGAAACTCGGGAACGAACGGTTTGGGTTACTGGCGCTGGCATGGGGATTGATCGGCTATGCGGGGGCGCTGGATC
TCGGCATCGGTCGAGCGCTGACGCAATTGGTCTCTAGTCTACGGGGCGCAGACAACCTGGCAGATATTCCGGACGTGTTG
GCGACAGCACGGCGGATCACTCTTGTGGCCGGACTGGTCGGTGGCATTTTGGTCGCGGCGACCGCGTTGCTGGGTGGATA
CGCCTGGATCGACGCGCATGGTACTCCCCCTCTTGAGATCCGCTCGGCCATGATCTTGCTGGCCATTGCGTTGCCGGCGC
AGGCGATGAGTGCCACGTACCGCGGAATGAATGAAGCCTTCCTGAACTTCAAAGGCATCAGTCTATTGCGCGCGGGACTC
GGCGTAATCAATTTTGGTGGGCCGTATCTGGTAACACTCTACACCAATCAACTTCCGTGGCTGATTGCAACGTTAGTTGT
CAGCAGGGTTCTTGCTTTGTTCGCATTTGATTACCTGGCTGCCCGATGCATGCGGAATGGTGGGGTTGGATATAAGGGCG
CCTATTCTTCAAGAATCGCGCGATCACTGTTCGCCTTCGGCGGATGGGTGACGGTCAGTAGCATCGTCAGCCCGATCCTG
GTCCAGGCGGATCGCTTTGTTATTGCCTCGGTCATCTCCGCTGCTGCCGTGACTGTTTATGTGTTGCCGTACGAGATGGT
GACGCAAAGCCTGATATTGGTAAGCTCGGTGTCGTCCGTAATGTTTCCAACCTTGAGCCAGTTGATGCGCGAGCGTCCTG
GCGAGTGGCGCCCCTATTTTCGTCGCTGGCTGTTCATCATGGTTGGATTGATGGCGGTCGTGAGCATATTGATGGCCTTG
CTTCTGCCGGATGTACTCTTGTGGTGGATAAAGGATCATCTGAAATCCGAGTCGATTGTAATCGGTCAAGTGCTGTGTCT
CGGAGTCTTTGCTAATGCGATCGGCTCCATGTTTTACGCGTTGATTCAGGCAGACGGGCGAGCGAGTCTGACCGCCACAT
TGCACATGATCGAATTACCGATTTTTGTTGTTTCGCTATATTTTCTCCTAAATACATACGGTATTCACGGTGCGGCATGG
GCCTGGGTGGGTCGTATGATTTTTGACGCCAGCGCGCTCGCATACTATTCCAGGATGCGGAATGTTTGA

Upstream 100 bases:

>100_bases
TTTGCGCAATAGCAAGGTAGCTGGTCTAGTGAGGGAGCTTTGAGAATTGGGAAGCACCGTCTGCGGCCATGATCCGCTTG
CGAAACCAAATGATTAGATC

Downstream 100 bases:

>100_bases
GTTATTGCTGCTCGTTACGTTCGCAGGGCTGCTGACAGCGAGTCGGCGGCCATTGGGGTTTGGGAACCCGTTCCAGATTT
ATTTCTTCGTTTGGTTCTCT

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MRLSHISWNLAGLTLPLLVAAVTVPQLIQKLGNERFGLLALAWGLIGYAGALDLGIGRALTQLVSSLRGADNLADIPDVL
ATARRITLVAGLVGGILVAATALLGGYAWIDAHGTPPLEIRSAMILLAIALPAQAMSATYRGMNEAFLNFKGISLLRAGL
GVINFGGPYLVTLYTNQLPWLIATLVVSRVLALFAFDYLAARCMRNGGVGYKGAYSSRIARSLFAFGGWVTVSSIVSPIL
VQADRFVIASVISAAAVTVYVLPYEMVTQSLILVSSVSSVMFPTLSQLMRERPGEWRPYFRRWLFIMVGLMAVVSILMAL
LLPDVLLWWIKDHLKSESIVIGQVLCLGVFANAIGSMFYALIQADGRASLTATLHMIELPIFVVSLYFLLNTYGIHGAAW
AWVGRMIFDASALAYYSRMRNV

Sequences:

>Translated_422_residues
MRLSHISWNLAGLTLPLLVAAVTVPQLIQKLGNERFGLLALAWGLIGYAGALDLGIGRALTQLVSSLRGADNLADIPDVL
ATARRITLVAGLVGGILVAATALLGGYAWIDAHGTPPLEIRSAMILLAIALPAQAMSATYRGMNEAFLNFKGISLLRAGL
GVINFGGPYLVTLYTNQLPWLIATLVVSRVLALFAFDYLAARCMRNGGVGYKGAYSSRIARSLFAFGGWVTVSSIVSPIL
VQADRFVIASVISAAAVTVYVLPYEMVTQSLILVSSVSSVMFPTLSQLMRERPGEWRPYFRRWLFIMVGLMAVVSILMAL
LLPDVLLWWIKDHLKSESIVIGQVLCLGVFANAIGSMFYALIQADGRASLTATLHMIELPIFVVSLYFLLNTYGIHGAAW
AWVGRMIFDASALAYYSRMRNV
>Mature_422_residues
MRLSHISWNLAGLTLPLLVAAVTVPQLIQKLGNERFGLLALAWGLIGYAGALDLGIGRALTQLVSSLRGADNLADIPDVL
ATARRITLVAGLVGGILVAATALLGGYAWIDAHGTPPLEIRSAMILLAIALPAQAMSATYRGMNEAFLNFKGISLLRAGL
GVINFGGPYLVTLYTNQLPWLIATLVVSRVLALFAFDYLAARCMRNGGVGYKGAYSSRIARSLFAFGGWVTVSSIVSPIL
VQADRFVIASVISAAAVTVYVLPYEMVTQSLILVSSVSSVMFPTLSQLMRERPGEWRPYFRRWLFIMVGLMAVVSILMAL
LLPDVLLWWIKDHLKSESIVIGQVLCLGVFANAIGSMFYALIQADGRASLTATLHMIELPIFVVSLYFLLNTYGIHGAAW
AWVGRMIFDASALAYYSRMRNV

Specific function: Could be an O-antigen transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 45718; Mature: 45718

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSHISWNLAGLTLPLLVAAVTVPQLIQKLGNERFGLLALAWGLIGYAGALDLGIGRAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQLVSSLRGADNLADIPDVLATARRITLVAGLVGGILVAATALLGGYAWIDAHGTPPLEI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHH
RSAMILLAIALPAQAMSATYRGMNEAFLNFKGISLLRAGLGVINFGGPYLVTLYTNQLPW
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCHH
LIATLVVSRVLALFAFDYLAARCMRNGGVGYKGAYSSRIARSLFAFGGWVTVSSIVSPIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQADRFVIASVISAAAVTVYVLPYEMVTQSLILVSSVSSVMFPTLSQLMRERPGEWRPYF
HHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RRWLFIMVGLMAVVSILMALLLPDVLLWWIKDHLKSESIVIGQVLCLGVFANAIGSMFYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LIQADGRASLTATLHMIELPIFVVSLYFLLNTYGIHGAAWAWVGRMIFDASALAYYSRMR
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NV
CC
>Mature Secondary Structure
MRLSHISWNLAGLTLPLLVAAVTVPQLIQKLGNERFGLLALAWGLIGYAGALDLGIGRAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQLVSSLRGADNLADIPDVLATARRITLVAGLVGGILVAATALLGGYAWIDAHGTPPLEI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHH
RSAMILLAIALPAQAMSATYRGMNEAFLNFKGISLLRAGLGVINFGGPYLVTLYTNQLPW
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCHH
LIATLVVSRVLALFAFDYLAARCMRNGGVGYKGAYSSRIARSLFAFGGWVTVSSIVSPIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQADRFVIASVISAAAVTVYVLPYEMVTQSLILVSSVSSVMFPTLSQLMRERPGEWRPYF
HHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RRWLFIMVGLMAVVSILMALLLPDVLLWWIKDHLKSESIVIGQVLCLGVFANAIGSMFYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LIQADGRASLTATLHMIELPIFVVSLYFLLNTYGIHGAAWAWVGRMIFDASALAYYSRMR
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]