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The map label for this gene is yeaT [C]

Identifier: 73538817

GI number: 73538817

Start: 1719987

End: 1720901

Strand: Reverse

Name: yeaT [C]

Synonym: Reut_B4992

Alternate gene names: 73538817

Gene position: 1720901-1719987 (Counterclockwise)

Preceding gene: 73538821

Following gene: 73538816

Centisome position: 63.13

GC content: 67.98

Gene sequence:

>915_bases
ATGGACCGCATCGGCGATATCGGCTTGTTCCTCCGTGTGCTGGATCTCGGTTCGATCAGTGCCGCCGCGCGCAGCATGGA
TCTGTCCGTGGCGGTGGCTAGCCAGCGCCTGCAGCGGCTCGAACGCGATCTCGGCGTCCGACTGCTGCATCGCACGACGC
GACGCCTGCACGCGACCCCGGAGGGCGCGATCCTGGCGGAGCAGGGCCGCGCGCTCGTCGAAGACCTCGATGCGCTGGGC
AGCTCGCTGCGCCAGGCAGGTAGCAGCATCTCCGGTACCTTGCGGCTGACCACGTCGTCGTCGTTCGGGCGCCTGTATAT
TTCGCCGCTGCTGCCGGAATTCATGGCGATCCATCCCGGGCTGAAGCTCAGCTTCACCATGACCGACAACGTGCTGGACC
TTGTCAGCGCCGGGTTCGACCTGGCGATCCGGATCGGCACGCTTGACGATTCGACGCTGGTTGCGCGCAAGCTGGCCAGC
AACCGGCGGCTGTTGTGTGCCTCGCCGGAATACCTGAGCCGCCGGGGTACGCCGCGCACGCCGCAGGACCTTGCCAGCCA
TGATTGCCTGGTGCTGGTGGGCAGCCAGGGGCGGCAGGACGTCTGGCACATCGGCGATGGGGCGGGCGGTGAGATCGCCG
TCCGGGTGCGCGGACCGATCGAGGCCAACTCTGGCGAGTTGCTGTCGGATGCCGCGCTGGCCGGTCTGGGAATCGCCCTG
CATTCGACCTGGCACGTTTGCGCGGCGCTGCGCAAGGGACAACTGGTGCCGGTGCTGGCCGATTATCCGCTGGCGGAGTC
GGGCATCTACGCGGTCATGCCGCAACGCCGGCTGGTGCCGCCGCGCGTTCGGGCCTTCGTGGATTTCCTGGCCGAACGCT
TTGGCGAGAATCCGCCGTGGGAGCGTCTGGCCTGA

Upstream 100 bases:

>100_bases
ATCGCAGGGTGGGAGTGCGGGAAGCCTGGAGTGTCAACCTTTTCATCTTCATTAAAAACAGGCAAGATGGATAATCAGTT
TCAATAGAATATTGATAATC

Downstream 100 bases:

>100_bases
CGGGGCGCGCCCCAGTGCAACCGGTGCCTAAAAAATGGGCGGTCCGGTGCGTTGACGCACAGACACGGCGTTTGGCGGGT
GACGGGCGAGGATATCCACA

Product: regulatory protein LysR

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDRIGDIGLFLRVLDLGSISAAARSMDLSVAVASQRLQRLERDLGVRLLHRTTRRLHATPEGAILAEQGRALVEDLDALG
SSLRQAGSSISGTLRLTTSSSFGRLYISPLLPEFMAIHPGLKLSFTMTDNVLDLVSAGFDLAIRIGTLDDSTLVARKLAS
NRRLLCASPEYLSRRGTPRTPQDLASHDCLVLVGSQGRQDVWHIGDGAGGEIAVRVRGPIEANSGELLSDAALAGLGIAL
HSTWHVCAALRKGQLVPVLADYPLAESGIYAVMPQRRLVPPRVRAFVDFLAERFGENPPWERLA

Sequences:

>Translated_304_residues
MDRIGDIGLFLRVLDLGSISAAARSMDLSVAVASQRLQRLERDLGVRLLHRTTRRLHATPEGAILAEQGRALVEDLDALG
SSLRQAGSSISGTLRLTTSSSFGRLYISPLLPEFMAIHPGLKLSFTMTDNVLDLVSAGFDLAIRIGTLDDSTLVARKLAS
NRRLLCASPEYLSRRGTPRTPQDLASHDCLVLVGSQGRQDVWHIGDGAGGEIAVRVRGPIEANSGELLSDAALAGLGIAL
HSTWHVCAALRKGQLVPVLADYPLAESGIYAVMPQRRLVPPRVRAFVDFLAERFGENPPWERLA
>Mature_304_residues
MDRIGDIGLFLRVLDLGSISAAARSMDLSVAVASQRLQRLERDLGVRLLHRTTRRLHATPEGAILAEQGRALVEDLDALG
SSLRQAGSSISGTLRLTTSSSFGRLYISPLLPEFMAIHPGLKLSFTMTDNVLDLVSAGFDLAIRIGTLDDSTLVARKLAS
NRRLLCASPEYLSRRGTPRTPQDLASHDCLVLVGSQGRQDVWHIGDGAGGEIAVRVRGPIEANSGELLSDAALAGLGIAL
HSTWHVCAALRKGQLVPVLADYPLAESGIYAVMPQRRLVPPRVRAFVDFLAERFGENPPWERLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=36.4864864864865, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=36.3945578231293, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=33.9160839160839, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=33.7837837837838, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=28.7162162162162, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=27.4305555555556, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=28.9115646258503, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788706, Length=288, Percent_Identity=28.125, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789173, Length=272, Percent_Identity=27.9411764705882, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786448, Length=276, Percent_Identity=25.7246376811594, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=246, Percent_Identity=25.609756097561, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32840; Mature: 32840

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIGDIGLFLRVLDLGSISAAARSMDLSVAVASQRLQRLERDLGVRLLHRTTRRLHATP
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGAILAEQGRALVEDLDALGSSLRQAGSSISGTLRLTTSSSFGRLYISPLLPEFMAIHPG
CCCEEHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEHHHHHHHHHHCCC
LKLSFTMTDNVLDLVSAGFDLAIRIGTLDDSTLVARKLASNRRLLCASPEYLSRRGTPRT
CEEEEEECHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCC
PQDLASHDCLVLVGSQGRQDVWHIGDGAGGEIAVRVRGPIEANSGELLSDAALAGLGIAL
HHHHCCCCEEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
HSTWHVCAALRKGQLVPVLADYPLAESGIYAVMPQRRLVPPRVRAFVDFLAERFGENPPW
HHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCH
ERLA
HCCC
>Mature Secondary Structure
MDRIGDIGLFLRVLDLGSISAAARSMDLSVAVASQRLQRLERDLGVRLLHRTTRRLHATP
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGAILAEQGRALVEDLDALGSSLRQAGSSISGTLRLTTSSSFGRLYISPLLPEFMAIHPG
CCCEEHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEHHHHHHHHHHCCC
LKLSFTMTDNVLDLVSAGFDLAIRIGTLDDSTLVARKLASNRRLLCASPEYLSRRGTPRT
CEEEEEECHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCC
PQDLASHDCLVLVGSQGRQDVWHIGDGAGGEIAVRVRGPIEANSGELLSDAALAGLGIAL
HHHHCCCCEEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
HSTWHVCAALRKGQLVPVLADYPLAESGIYAVMPQRRLVPPRVRAFVDFLAERFGENPPW
HHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCH
ERLA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]