Click here to switch to the map view.

The map label for this gene is ycaC [H]

Identifier: 73538507

GI number: 73538507

Start: 1377432

End: 1378073

Strand: Reverse

Name: ycaC [H]

Synonym: Reut_B4681

Alternate gene names: 73538507

Gene position: 1378073-1377432 (Counterclockwise)

Preceding gene: 73538508

Following gene: 73538502

Centisome position: 50.55

GC content: 60.75

Gene sequence:

>642_bases
ATGGCCAGCGAACCCATCCGCGATCCCCTCAAGGACCACCTGCTCACCCCGCAAAACGCAGCTTTCGTCATCATCGACTA
TCAGCCGGTGCAGGTGAACTCGATTGCCTCGATGGACCGGCAACTGCTGATCAACAACATTGTCGGCACGTCGAAGGCGG
CCATTGCCTACAAGCTGCCGATCATCCACTCGACCGTGAACGTCAAGACCGGCCTGAACAAGCCGCCCATCCCGCAGCTT
GCCAAGGTACTGAAGGAGTATCCGACCTACGACCGTACCACCATCAATTCGTGGGAAGACGTGGAGTTCCGTGAGGCCGT
GAAGGCGACGGGCCGCAAGAAGCTCATCATGACTGCGTTGTGGACCGAGGCGTGCCTGACGTTCCCCGCGCTCGATGCGC
TGGCCGAGGGCTATGAAGTGTATGTCGTGGCCGACGCCGTAGGCGGTACGTCCGTGGTCGCGCATGAAGCCGCGCTGCGC
CGGATCGAGCAGGCCGGCGGCAAGATGATCAGCGTAGCGCAATTGTTCTGCGAACTGCAGCGCGACTGGTCTCGTAAAGA
AACCGTGCCCGCATTCATGAACCTGTTCATCGAGACCGGCGGCACGGCCGGCATCCAGTTCTCGTACGACCGTACCGAGT
AA

Upstream 100 bases:

>100_bases
TTCCTCACCTATGCTGCAAGGGCTCGCTGCAAGCCGTAGTTGACCAGCGGCGCCACGCGCACCGCATGGCGAGCGTTTGC
CCAATTTCCCGGAGACCACC

Downstream 100 bases:

>100_bases
GTACCTGCGGGCGGAGCCCGGCGCATCCGTTCCCCGAAACGATGGGGCCGGCTCCCCCACGGGAGTGAGTCCGTGTTATC
TCCGTGGTCATTCCCATTTC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MASEPIRDPLKDHLLTPQNAAFVIIDYQPVQVNSIASMDRQLLINNIVGTSKAAIAYKLPIIHSTVNVKTGLNKPPIPQL
AKVLKEYPTYDRTTINSWEDVEFREAVKATGRKKLIMTALWTEACLTFPALDALAEGYEVYVVADAVGGTSVVAHEAALR
RIEQAGGKMISVAQLFCELQRDWSRKETVPAFMNLFIETGGTAGIQFSYDRTE

Sequences:

>Translated_213_residues
MASEPIRDPLKDHLLTPQNAAFVIIDYQPVQVNSIASMDRQLLINNIVGTSKAAIAYKLPIIHSTVNVKTGLNKPPIPQL
AKVLKEYPTYDRTTINSWEDVEFREAVKATGRKKLIMTALWTEACLTFPALDALAEGYEVYVVADAVGGTSVVAHEAALR
RIEQAGGKMISVAQLFCELQRDWSRKETVPAFMNLFIETGGTAGIQFSYDRTE
>Mature_212_residues
ASEPIRDPLKDHLLTPQNAAFVIIDYQPVQVNSIASMDRQLLINNIVGTSKAAIAYKLPIIHSTVNVKTGLNKPPIPQLA
KVLKEYPTYDRTTINSWEDVEFREAVKATGRKKLIMTALWTEACLTFPALDALAEGYEVYVVADAVGGTSVVAHEAALRR
IEQAGGKMISVAQLFCELQRDWSRKETVPAFMNLFIETGGTAGIQFSYDRTE

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=170, Percent_Identity=35.2941176470588, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 23570; Mature: 23439

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEPIRDPLKDHLLTPQNAAFVIIDYQPVQVNSIASMDRQLLINNIVGTSKAAIAYKLP
CCCCCCCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
IIHSTVNVKTGLNKPPIPQLAKVLKEYPTYDRTTINSWEDVEFREAVKATGRKKLIMTAL
EEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
WTEACLTFPALDALAEGYEVYVVADAVGGTSVVAHEAALRRIEQAGGKMISVAQLFCELQ
HHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDWSRKETVPAFMNLFIETGGTAGIQFSYDRTE
HHHCHHCCHHHHHHHHHHCCCCCCEEEECCCCC
>Mature Secondary Structure 
ASEPIRDPLKDHLLTPQNAAFVIIDYQPVQVNSIASMDRQLLINNIVGTSKAAIAYKLP
CCCCCCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
IIHSTVNVKTGLNKPPIPQLAKVLKEYPTYDRTTINSWEDVEFREAVKATGRKKLIMTAL
EEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
WTEACLTFPALDALAEGYEVYVVADAVGGTSVVAHEAALRRIEQAGGKMISVAQLFCELQ
HHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDWSRKETVPAFMNLFIETGGTAGIQFSYDRTE
HHHCHHCCHHHHHHHHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]