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The map label for this gene is rbcR [H]

Identifier: 73538483

GI number: 73538483

Start: 1347909

End: 1348847

Strand: Direct

Name: rbcR [H]

Synonym: Reut_B4657

Alternate gene names: 73538483

Gene position: 1347909-1348847 (Clockwise)

Preceding gene: 73538471

Following gene: 73538484

Centisome position: 49.44

GC content: 60.81

Gene sequence:

>939_bases
ATGAAGAATGCCACCCTGCGCCAGCTTAAAGTCTTTGAAACCGTGGCCCGGCACATGAGCTTTTCGCGTGCCGCCGAAGA
ACTGCACCTGACTCAACCGGCCGTGTCCACGCAAGTCAGGCAGCTCGAAAGCCACGTCGGCCTGCCGTTGTTCGAGCAAC
TGGGCAAGAAAATCTATCTCACGCCCGCGGGCCATGAGATGCTCCACTACAGCCGCAGCATCATCCAGCAATTCCGCGAA
GCGGAAGACGCCATGTCGCAGCTCAAGGGCATCTCCGGCGGCCGGCTCAACGTAGCGGTGATCAGCGCTGGCGACTATTT
CTTCCCACGGCTGCTGGCCGAATTCATGGAACGGCACGACGGCGTCACGCTGAATCTTGCGGTGCACAATCGCGAGGAAC
TGTTGCACCAGCTGGCTGGCAACCTCACGGACCTCGCCGTCATGGTGCGCCCGCCCGAAAGCATGGACACCATCAACGAA
TCGTTCGCGCCGCACCCTTATGTGATTGTCGCCGCGCCGACACATCCCCTGGTCGGACAGCGCAAGATCCCGCTGTCCGC
GCTCACCGATGAGGCTTTCGTCGCACGGGAGAAGGGCTCCGATACGTGGAACTCCATGCAGGAAGGCTTTGCCGGGCGGC
TGTCGAACATGCGCATCGCCATGGAGATCAAAAGTACCGAGACCATCAAGCAGGCGGTCATTGCGAACATGGGCATTGCG
TTCCTTTCCGCCCATACCGTGGGCCTGGAGTTGCAGACCGGCAAGCTTGCCGTCCTGGATATCGAAGGCTTCCCGGTCAT
GCTCAACTGGTATGTGGTGCACCGCAAGAACAAGCGGTTGCCGCCCGTGGCGCTTGCGTTCAAGCAGTTCCTGATGGAGG
AAGGCGCAGGCCTGATTCAGCGCATCACAGGCGTTGAGGGGCTGATCCGGCACGCGTGA

Upstream 100 bases:

>100_bases
AAATCTGTGGGATTGATGCTACTTCAATCTAAGATTCAGACGGCTTAAAGTTTTTTATCATATGCATTGACGACCGTTTA
TATATTGCACGGAACAACTG

Downstream 100 bases:

>100_bases
TACATAAACGATATCTTATGATTTATCGATGAAACTTTAATTATCGTAAATCCATGGCCGCCCCTATGCTTCCCTCTACC
GCACCGCCAGAGAGAAGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLESHVGLPLFEQLGKKIYLTPAGHEMLHYSRSIIQQFRE
AEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMERHDGVTLNLAVHNREELLHQLAGNLTDLAVMVRPPESMDTINE
SFAPHPYVIVAAPTHPLVGQRKIPLSALTDEAFVAREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQTGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIQRITGVEGLIRHA

Sequences:

>Translated_312_residues
MKNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLESHVGLPLFEQLGKKIYLTPAGHEMLHYSRSIIQQFRE
AEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMERHDGVTLNLAVHNREELLHQLAGNLTDLAVMVRPPESMDTINE
SFAPHPYVIVAAPTHPLVGQRKIPLSALTDEAFVAREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQTGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIQRITGVEGLIRHA
>Mature_312_residues
MKNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLESHVGLPLFEQLGKKIYLTPAGHEMLHYSRSIIQQFRE
AEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMERHDGVTLNLAVHNREELLHQLAGNLTDLAVMVRPPESMDTINE
SFAPHPYVIVAAPTHPLVGQRKIPLSALTDEAFVAREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQTGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIQRITGVEGLIRHA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=28.125, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI157672245, Length=194, Percent_Identity=34.020618556701, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788748, Length=308, Percent_Identity=26.2987012987013, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=24.8979591836735, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=26.0726072607261, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=23.3606557377049, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=198, Percent_Identity=30.3030303030303, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082132, Length=303, Percent_Identity=26.0726072607261, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789173, Length=299, Percent_Identity=27.0903010033445, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=21.5488215488215, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=155, Percent_Identity=31.6129032258064, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=25.6, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789204, Length=313, Percent_Identity=22.6837060702875, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI145693193, Length=177, Percent_Identity=28.8135593220339, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787949, Length=92, Percent_Identity=40.2173913043478, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=198, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=248, Percent_Identity=22.1774193548387, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787806, Length=126, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34723; Mature: 34723

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLESHVGLPLFEQLGKKIYL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCEEEE
TPAGHEMLHYSRSIIQQFREAEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMERHD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
GVTLNLAVHNREELLHQLAGNLTDLAVMVRPPESMDTINESFAPHPYVIVAAPTHPLVGQ
CEEEEEEECCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHCCCCCCEEEEECCCCCCCCC
RKIPLSALTDEAFVAREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
CCCCHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVGLELQTGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIQ
HHHHHEEEEEEECCCEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHH
RITGVEGLIRHA
HHHHHHHHHHCC
>Mature Secondary Structure
MKNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLESHVGLPLFEQLGKKIYL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCEEEE
TPAGHEMLHYSRSIIQQFREAEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMERHD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
GVTLNLAVHNREELLHQLAGNLTDLAVMVRPPESMDTINESFAPHPYVIVAAPTHPLVGQ
CEEEEEEECCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHCCCCCCEEEEECCCCCCCCC
RKIPLSALTDEAFVAREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
CCCCHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVGLELQTGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIQ
HHHHHEEEEEEECCCEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHH
RITGVEGLIRHA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]