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The map label for this gene is yodF [H]

Identifier: 73538319

GI number: 73538319

Start: 1164317

End: 1165819

Strand: Reverse

Name: yodF [H]

Synonym: Reut_B4492

Alternate gene names: 73538319

Gene position: 1165819-1164317 (Counterclockwise)

Preceding gene: 73538320

Following gene: 73538318

Centisome position: 42.76

GC content: 59.75

Gene sequence:

>1503_bases
ATGAGCGAGACACCCGCAGTCAATAGCGTGGCAATGGCGGTGTTCATTGCTTTCTTCGTCCTCGTCACAGTGCTGGGATT
CGTCGCGGCGCGGTGGAAGCGGGGGGATTTGTCACAGCTTCATGAATGGGGACTTGGCGGCCGGCAATTCGGCACGGTGA
TCTCATGGTTCCTTGTAGGCGGGGACTTCTATACGGCCTATACCGTCATCGCGGTCCCTGCGCTGGTCTATTCGGTGGGC
GCGTACGGCTTCTTCGCGATGCCCTATACGATCATCGTCTATCCGTTCGTGTTTGCAGTCATGCCCAGGCTGTGGGAGGT
GTGCCATCGCAAGAACCACATCACGGCTGCCGACTATGTGCAGGGCGAGATCGGAGGACGATGGCTTCCGGCGGCAGTAG
CGATCACCGGGATCATCGCCACGCTGCCTTATATCGCGCTGCAGCTGATTGGCATGCAAGTGGTGATCAAGGGGCTGGGC
GTCGATGGCGAACTGCCGCTGATCGTTGCCTTCGCCATTCTCGCCGTGTACACCTATTCGAGCGGGCTTCGTGCGCCCGC
GATGATTGCCTTCGTGAAGGACATCATGATCTATATCGTGGTCATTGCCGCGATCTCGGTCATCCCCAGCAAGCTTGGCG
GCTACGGTGCGTTGTTCCATGCTGCCGACACCTACTTCAACGCCAAGGGCGGCGCCACCGGCATCATCCTCAAGCCATCG
CAATTCACGGCGTACGCGACGCTGGCACTCGGGTCGGCGCTGGCGGGGTTCATGTATCCCCACACCATGACGGGGATACT
GTCTTCGGGTTCCGCAAACACTGTGCGCAAGAATGCCATCGCGCTGCCGGCGTACACATTGTTGCTGGGCCTGATTGCCG
TGCTCGGCTATATGGCGATTGCCGCCGGCGTGCATGTGTCATCCGCTTCGGATGTGGTGCCGGTGCTGTTCCTCAAGTTG
TTTCCGTCCTGGTTCGTGGGTTTTTGCGCAGCCGCGATCGCCATCAGTGCGCTCGTGCCGGCGGCAATCATGTCGATCGG
CGCGGCAAACCTGTTCACGCGCAATCTGTACAAGCCGCTGGTCGCGCCGAATGTGAGCCCCGAAAAAGAGGCTAAGAGTG
CCAAGCTGTTTTCGCTGGTCGTGAAGTTCGGCGCATTGCTCTTCATCATCGTGCTGCCCACACAATACGCGATCGACCTG
CAACTGCTCGGTGGCGTCTGGATTCTTCAGATCTTTCCAGCGGTGGTGTTCACGCTATACACACGACGCCTGACCGCGAC
CGGGCTGCTTGCCGGCTGGTTTGTCGGCATCGTCACCGGAACGGGACTCGCCATTTCCCTGGGCCTCAAGCCGGTGTATG
CGCTGCATATTGGCGATGGTGTGTATCCGACCTACGTTGGCGTGATTGCGCTGCTGGTCAACATCGTCGTGTCGGTAGCC
GTGTCGGCGCTGACACAAGCGCGTCGTGTTGCAGGCGAAGTTGGCACTGTTACGACGAGGTAG

Upstream 100 bases:

>100_bases
CTCAACCGGAATGGCTGGGCTTTCCATTCTTCTACTGGTATCAGTTCCTCTGGGTGCCGATTACCTCCTTGTTGCTGTAC
GTCGTCTATCGGAGGATGAA

Downstream 100 bases:

>100_bases
AGCATTTGCTTATGAGTCTGGATTGAAGTGAAGGCATGCCTTGGGCAGCGCCGTTCTGTTTCCTGTGGAACGGGGCTCAG
GCAACCGGCGCTGCTCTTTT

Product: Na+/solute symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MSETPAVNSVAMAVFIAFFVLVTVLGFVAARWKRGDLSQLHEWGLGGRQFGTVISWFLVGGDFYTAYTVIAVPALVYSVG
AYGFFAMPYTIIVYPFVFAVMPRLWEVCHRKNHITAADYVQGEIGGRWLPAAVAITGIIATLPYIALQLIGMQVVIKGLG
VDGELPLIVAFAILAVYTYSSGLRAPAMIAFVKDIMIYIVVIAAISVIPSKLGGYGALFHAADTYFNAKGGATGIILKPS
QFTAYATLALGSALAGFMYPHTMTGILSSGSANTVRKNAIALPAYTLLLGLIAVLGYMAIAAGVHVSSASDVVPVLFLKL
FPSWFVGFCAAAIAISALVPAAIMSIGAANLFTRNLYKPLVAPNVSPEKEAKSAKLFSLVVKFGALLFIIVLPTQYAIDL
QLLGGVWILQIFPAVVFTLYTRRLTATGLLAGWFVGIVTGTGLAISLGLKPVYALHIGDGVYPTYVGVIALLVNIVVSVA
VSALTQARRVAGEVGTVTTR

Sequences:

>Translated_500_residues
MSETPAVNSVAMAVFIAFFVLVTVLGFVAARWKRGDLSQLHEWGLGGRQFGTVISWFLVGGDFYTAYTVIAVPALVYSVG
AYGFFAMPYTIIVYPFVFAVMPRLWEVCHRKNHITAADYVQGEIGGRWLPAAVAITGIIATLPYIALQLIGMQVVIKGLG
VDGELPLIVAFAILAVYTYSSGLRAPAMIAFVKDIMIYIVVIAAISVIPSKLGGYGALFHAADTYFNAKGGATGIILKPS
QFTAYATLALGSALAGFMYPHTMTGILSSGSANTVRKNAIALPAYTLLLGLIAVLGYMAIAAGVHVSSASDVVPVLFLKL
FPSWFVGFCAAAIAISALVPAAIMSIGAANLFTRNLYKPLVAPNVSPEKEAKSAKLFSLVVKFGALLFIIVLPTQYAIDL
QLLGGVWILQIFPAVVFTLYTRRLTATGLLAGWFVGIVTGTGLAISLGLKPVYALHIGDGVYPTYVGVIALLVNIVVSVA
VSALTQARRVAGEVGTVTTR
>Mature_499_residues
SETPAVNSVAMAVFIAFFVLVTVLGFVAARWKRGDLSQLHEWGLGGRQFGTVISWFLVGGDFYTAYTVIAVPALVYSVGA
YGFFAMPYTIIVYPFVFAVMPRLWEVCHRKNHITAADYVQGEIGGRWLPAAVAITGIIATLPYIALQLIGMQVVIKGLGV
DGELPLIVAFAILAVYTYSSGLRAPAMIAFVKDIMIYIVVIAAISVIPSKLGGYGALFHAADTYFNAKGGATGIILKPSQ
FTAYATLALGSALAGFMYPHTMTGILSSGSANTVRKNAIALPAYTLLLGLIAVLGYMAIAAGVHVSSASDVVPVLFLKLF
PSWFVGFCAAAIAISALVPAAIMSIGAANLFTRNLYKPLVAPNVSPEKEAKSAKLFSLVVKFGALLFIIVLPTQYAIDLQ
LLGGVWILQIFPAVVFTLYTRRLTATGLLAGWFVGIVTGTGLAISLGLKPVYALHIGDGVYPTYVGVIALLVNIVVSVAV
SALTQARRVAGEVGTVTTR

Specific function: Catalyzes The Sodium-Dependent Uptake Of Extracellular L-Proline. This Protein Is Also Capable Of Using Lithium As The Transport Cation. [C]

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 52875; Mature: 52744

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SETPAVNSVAMAVFIAFFVLVTVLGFVAARWKRGDLSQLHEWGLGGRQFGTVISWFLVG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHC
GDFYTAYTVIAVPALVYSVGAYGFFAMPYTIIVYPFVFAVMPRLWEVCHRKNHITAADYV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
QGEIGGRWLPAAVAITGIIATLPYIALQLIGMQVVIKGLGVDGELPLIVAFAILAVYTYS
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
SGLRAPAMIAFVKDIMIYIVVIAAISVIPSKLGGYGALFHAADTYFNAKGGATGIILKPS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCEEEEECCC
QFTAYATLALGSALAGFMYPHTMTGILSSGSANTVRKNAIALPAYTLLLGLIAVLGYMAI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
AAGVHVSSASDVVPVLFLKLFPSWFVGFCAAAIAISALVPAAIMSIGAANLFTRNLYKPL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAPNVSPEKEAKSAKLFSLVVKFGALLFIIVLPTQYAIDLQLLGGVWILQIFPAVVFTLY
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TRRLTATGLLAGWFVGIVTGTGLAISLGLKPVYALHIGDGVYPTYVGVIALLVNIVVSVA
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VSALTQARRVAGEVGTVTTR
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]