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The map label for this gene is fimZ [C]

Identifier: 73538297

GI number: 73538297

Start: 1135837

End: 1136535

Strand: Reverse

Name: fimZ [C]

Synonym: Reut_B4470

Alternate gene names: 73538297

Gene position: 1136535-1135837 (Counterclockwise)

Preceding gene: 73538298

Following gene: 73538296

Centisome position: 41.69

GC content: 61.95

Gene sequence:

>699_bases
GTGCCAGACCATAAATGCCTGCCGGATCATTCCTCAGGCAATGTGCCCAATGCCATTAGCGATGGAGTGTTTGCCGTGGC
CACAATCCTGATCGTCGACGACCATCCCGCTGTACGCGTGGTGCTGAAAACGCACCTGTCGCAGGTCCTCGGCGTGACGC
ATGTGCTGGAAGCGGACAATGGCCAGGCTGCCGTCGAGATCGTGCGCCAGTATGCGCCGGACGTCGTCATCCTTGACCTC
GACATTCCTCGTATCAACGGCCTGGACGTCATTCCGCGCCTCAAGGCCATCCAGCCCGGCGTGCGCATCCTGGTGATCTC
CGGCCAGGACCAGAACACCTTTGCGCCGCGTGCGCGGCAGGCCGGCGCCAACGGCTATGTCAGCAAGACCCAGGAATTGC
CCGAGATCGTGCGGTGCGTCGAATCCGTCCTGGCCGGGTATTCGGTCATGCCGGACGTCGATGGCGGACGCGCCGATGGC
GTGGACGAAACCCGCCGGCTGGGAAGCCTGTCTGACAAGGAACTCGTGATCATGCAGATGCTGGCCAAGGGCATGTCCAA
CAAGCAGATCGGAGAGGTGCTGTTCATCTCCAACAAGACGGTCAGCACGCACAAGACCCGCATCATGGAAAAGCTGGGCG
CGCGGTCCCTCGTAGACGTGATCGATTTCGCGCGGCGCCACCACATTGCCATCGGCTGA

Upstream 100 bases:

>100_bases
GGTGGGTGCAGGATCCTGCTCGTGAAGGTCAATCGGGAAAAGTCGTACCAGCGCTCGGAAATTTCCTGCGCCGGCGCGGA
AAATTGCTGAGCACAATGAT

Downstream 100 bases:

>100_bases
TGGAGATTCCCATGCACAGCGCATTCATCCTCGCCACGTCTGGCAGCGCCTGGATCGAACCGGCCACGCAGTATCTCAGC
GATGCGGGTTTGCCGGCGCA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MPDHKCLPDHSSGNVPNAISDGVFAVATILIVDDHPAVRVVLKTHLSQVLGVTHVLEADNGQAAVEIVRQYAPDVVILDL
DIPRINGLDVIPRLKAIQPGVRILVISGQDQNTFAPRARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADG
VDETRRLGSLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHIAIG

Sequences:

>Translated_232_residues
MPDHKCLPDHSSGNVPNAISDGVFAVATILIVDDHPAVRVVLKTHLSQVLGVTHVLEADNGQAAVEIVRQYAPDVVILDL
DIPRINGLDVIPRLKAIQPGVRILVISGQDQNTFAPRARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADG
VDETRRLGSLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHIAIG
>Mature_231_residues
PDHKCLPDHSSGNVPNAISDGVFAVATILIVDDHPAVRVVLKTHLSQVLGVTHVLEADNGQAAVEIVRQYAPDVVILDLD
IPRINGLDVIPRLKAIQPGVRILVISGQDQNTFAPRARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADGV
DETRRLGSLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHIAIG

Specific function: Probable transcriptional regulator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=208, Percent_Identity=33.6538461538462, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI1788712, Length=205, Percent_Identity=36.0975609756098, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1788222, Length=204, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1788521, Length=199, Percent_Identity=32.1608040201005, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787473, Length=184, Percent_Identity=31.5217391304348, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790102, Length=204, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 25102; Mature: 24971

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDHKCLPDHSSGNVPNAISDGVFAVATILIVDDHPAVRVVLKTHLSQVLGVTHVLEADN
CCCCCCCCCCCCCCCCCHHHCCHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCC
GQAAVEIVRQYAPDVVILDLDIPRINGLDVIPRLKAIQPGVRILVISGQDQNTFAPRARQ
CHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
AGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADGVDETRRLGSLSDKELVIMQM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
LAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHIAIG
HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PDHKCLPDHSSGNVPNAISDGVFAVATILIVDDHPAVRVVLKTHLSQVLGVTHVLEADN
CCCCCCCCCCCCCCCCHHHCCHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCC
GQAAVEIVRQYAPDVVILDLDIPRINGLDVIPRLKAIQPGVRILVISGQDQNTFAPRARQ
CHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
AGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADGVDETRRLGSLSDKELVIMQM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
LAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHIAIG
HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3127651; 10984043; 2314271 [H]