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The map label for this gene is ydeS [H]

Identifier: 73538273

GI number: 73538273

Start: 1107576

End: 1108208

Strand: Direct

Name: ydeS [H]

Synonym: Reut_B4446

Alternate gene names: 73538273

Gene position: 1107576-1108208 (Clockwise)

Preceding gene: 73538270

Following gene: 73538274

Centisome position: 40.63

GC content: 59.4

Gene sequence:

>633_bases
GTGACCGAAAACAGCCAGAGCCGGCGCGGCCGGCCCGCCAACGAGGCGCTTCGCCAAACGATAGTCGACACCGCCTGCGA
ACTCTTCGTGGAACTGGGTTTTCAAGCGACGACCATGGACAAGGTCGCCCAGCGGGCGAAGATATCCAAGCTAAGCATCT
ATCGGCACTTCGAGAACAAGGAGGCGCTGTTCAGCGCGGCCATGGTGGCCCGCTGCGAGCAGTTTGCACCGCAGGCCCTT
TTTGAAGGCGTCGACGGCTCGGCCGAAGATCAGCTCATGGCGTTGGGGTCATCCCTGCTTCGCACGCTGTTGAGCCCGGA
CGTCCGTAGTGTCGAAGCCATGGTTTTGGCCGACAAGACGAATCAAAAGTCGTTAAGCAAGCTCCATTACGAAGCCGGGC
CCGCCCATGTCATCGCCCAAATCGAGGCCGTGTTGCGTCAGTTGCACGCGAAAGCGATTCTGAACGTACCCGATGCTCTC
CAGTCCGCCCGCTTGTTTGCCGCGCTTTTCAAAGGATCCGATCTCCTGCTTATCGCCCGCTTCGACGAGGCGAAAGCAAA
GGATGACAACGAAATCGAATCCTATTGCCGGTCGGCCGTCACCATGTTCATCGCCGCGCACGGTGGCATCTAA

Upstream 100 bases:

>100_bases
TTTGGACAACCGGTTAAAACATACCCTTGGCTTGCTCATTTACGATACTTAATGGTATCGTAGCGCAAGAATTTAAATAC
TGTCAAGTATCGGAATTGTC

Downstream 100 bases:

>100_bases
AGATCCATCGCGGCCGATGAAGAACACGCAGCGGTTGCATACGATGTGCGCCCTGAGCAACCCATGGATATGCGTGGACG
ACTGATGGGCGAGGCCATTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTENSQSRRGRPANEALRQTIVDTACELFVELGFQATTMDKVAQRAKISKLSIYRHFENKEALFSAAMVARCEQFAPQAL
FEGVDGSAEDQLMALGSSLLRTLLSPDVRSVEAMVLADKTNQKSLSKLHYEAGPAHVIAQIEAVLRQLHAKAILNVPDAL
QSARLFAALFKGSDLLLIARFDEAKAKDDNEIESYCRSAVTMFIAAHGGI

Sequences:

>Translated_210_residues
MTENSQSRRGRPANEALRQTIVDTACELFVELGFQATTMDKVAQRAKISKLSIYRHFENKEALFSAAMVARCEQFAPQAL
FEGVDGSAEDQLMALGSSLLRTLLSPDVRSVEAMVLADKTNQKSLSKLHYEAGPAHVIAQIEAVLRQLHAKAILNVPDAL
QSARLFAALFKGSDLLLIARFDEAKAKDDNEIESYCRSAVTMFIAAHGGI
>Mature_209_residues
TENSQSRRGRPANEALRQTIVDTACELFVELGFQATTMDKVAQRAKISKLSIYRHFENKEALFSAAMVARCEQFAPQALF
EGVDGSAEDQLMALGSSLLRTLLSPDVRSVEAMVLADKTNQKSLSKLHYEAGPAHVIAQIEAVLRQLHAKAILNVPDALQ
SARLFAALFKGSDLLLIARFDEAKAKDDNEIESYCRSAVTMFIAAHGGI

Specific function: Potential Regulator Protein For The Acref/Envcd Genes. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23012; Mature: 22880

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTENSQSRRGRPANEALRQTIVDTACELFVELGFQATTMDKVAQRAKISKLSIYRHFENK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
EALFSAAMVARCEQFAPQALFEGVDGSAEDQLMALGSSLLRTLLSPDVRSVEAMVLADKT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
NQKSLSKLHYEAGPAHVIAQIEAVLRQLHAKAILNVPDALQSARLFAALFKGSDLLLIAR
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEE
FDEAKAKDDNEIESYCRSAVTMFIAAHGGI
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TENSQSRRGRPANEALRQTIVDTACELFVELGFQATTMDKVAQRAKISKLSIYRHFENK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
EALFSAAMVARCEQFAPQALFEGVDGSAEDQLMALGSSLLRTLLSPDVRSVEAMVLADKT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
NQKSLSKLHYEAGPAHVIAQIEAVLRQLHAKAILNVPDALQSARLFAALFKGSDLLLIAR
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEE
FDEAKAKDDNEIESYCRSAVTMFIAAHGGI
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]