Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 73538237

GI number: 73538237

Start: 1065253

End: 1066536

Strand: Reverse

Name: rbn [C]

Synonym: Reut_B4408

Alternate gene names: 73538237

Gene position: 1066536-1065253 (Counterclockwise)

Preceding gene: 73538238

Following gene: 73538236

Centisome position: 39.12

GC content: 61.92

Gene sequence:

>1284_bases
ATGTTCCGAGAGCGTCCCATGCTTCTCCCTGGCTCCGTTTTCACACGTACCGCCTCCCAACTCGTCCGCGAAAGCATCAA
TTCGTGGATCGACGACTACGCGCCCAGCATGGGCGCTGCGCTCGCGTACTACACCGTCTTCTCCATTGCCCCATTACTGA
TGATTGTCATCAGTATTGCGGGCGTGATATTCGGTCCCGACGCGGCGCGCGGCGAGGTGGTAGGCGAGCTGAATGGACTG
ATCGGCTCGGAAGGCGCGCAGGCCGTGGAAGAGATGCTGGTGGCCGTCAGCAAGCCTGCGGCCAGTACGGTGACGGCCAT
CCTTGGTGTGCTGGCGTTGCTCGTCGGCGCTACCACGGTGTTCTCGGAGCTGCAGTCGGCACTCGACAGAATCTGGCGCG
TTCCGCAGCCCGAAAAGATCTCCGGCCTGTTTTCGCTCATTCGCTCCCGCTTGCTGTCGTTCGGCATGATCCTCGGCATG
GGCTTCCTGCTTGTCGTTTCGTTGCTGCTCAGTGCCGGTATCTCGGCGATGGGCCGGGAATGGGGGCCGCTGCTCGGCAT
ACGGGAGGCCGTCGGGCACGTCCTCGACACCGTCGTGAGCCTGGTCTTGACGACCGTGGTGTTCGCGATGATCTACAAAT
TCATGCCACGGACGAAGGTTCGATGGTTCGACGTCTGGCTCGGCGCCGTCGTCACCGCGGCGTTATTCACGCTGGGAAAG
TTCCTGATCGGCCTGTACATCGGCAAGAGCGGTGTTGCCAGCGGTTATGGCGCCGCAGGGTCGCTGGTGGTATTGCTGCT
ATGGGTGTACTACGCTGCGCAGATCTTCCTGCTCGGAGCCGAATTTACCTGGCATTTCGCACAGCGTTTCGGGTCATTGC
GGCACAGCGGTCAACTCCCGCCGCCCGCGCGCATCTTGTACCGGCGCGAGCACACAGGCGTGGACCAGACTGTTCAGCGC
GATGCCGGACGCCATCCGCTAAACGGTGGGGATGGTGTCACCACGCCCATCGTCGCTGTTTATGTCGATGAAATCCTGAG
TGCTGCCTGCCGGGCCGGGGAACTAGGACAGGTGACGGCCACTGCTATCGCAGACGCCGCGGAAAACGCGTTCATGCACT
TCCAAAGCCTGGCGAGGACAGATAAGCGGGAACTGCGCGAACGGCTGCGCGAGCTGTCGCTGGCTTTGTCGGTCTTTGCG
GAAGCGGGCGATCTTTCGGCCGAAACGCGGGACCTGATCAAACTTGGGGTGGCGGACGTCAGGGCCTACCTCGACTCCGT
TTAA

Upstream 100 bases:

>100_bases
TGCAGTCGCAAGTGTCACGCCACATCGGCGCGGCGTTACGGACGCCCTGTGCAGCGGCCTGGAGCCCGCACAGGAATGGC
TCTTGCTTGATCCTGCGGAG

Downstream 100 bases:

>100_bases
GCTGGGGTCCTGTCAAGAATTACGAAGCTCCCTTCGATTTTTTGCAATCTGCCGGCGTAGCGGTTCCCGCGCAGGGGGTC
CCGTTGCCTTTTCCATGCCA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MFRERPMLLPGSVFTRTASQLVRESINSWIDDYAPSMGAALAYYTVFSIAPLLMIVISIAGVIFGPDAARGEVVGELNGL
IGSEGAQAVEEMLVAVSKPAASTVTAILGVLALLVGATTVFSELQSALDRIWRVPQPEKISGLFSLIRSRLLSFGMILGM
GFLLVVSLLLSAGISAMGREWGPLLGIREAVGHVLDTVVSLVLTTVVFAMIYKFMPRTKVRWFDVWLGAVVTAALFTLGK
FLIGLYIGKSGVASGYGAAGSLVVLLLWVYYAAQIFLLGAEFTWHFAQRFGSLRHSGQLPPPARILYRREHTGVDQTVQR
DAGRHPLNGGDGVTTPIVAVYVDEILSAACRAGELGQVTATAIADAAENAFMHFQSLARTDKRELRERLRELSLALSVFA
EAGDLSAETRDLIKLGVADVRAYLDSV

Sequences:

>Translated_427_residues
MFRERPMLLPGSVFTRTASQLVRESINSWIDDYAPSMGAALAYYTVFSIAPLLMIVISIAGVIFGPDAARGEVVGELNGL
IGSEGAQAVEEMLVAVSKPAASTVTAILGVLALLVGATTVFSELQSALDRIWRVPQPEKISGLFSLIRSRLLSFGMILGM
GFLLVVSLLLSAGISAMGREWGPLLGIREAVGHVLDTVVSLVLTTVVFAMIYKFMPRTKVRWFDVWLGAVVTAALFTLGK
FLIGLYIGKSGVASGYGAAGSLVVLLLWVYYAAQIFLLGAEFTWHFAQRFGSLRHSGQLPPPARILYRREHTGVDQTVQR
DAGRHPLNGGDGVTTPIVAVYVDEILSAACRAGELGQVTATAIADAAENAFMHFQSLARTDKRELRERLRELSLALSVFA
EAGDLSAETRDLIKLGVADVRAYLDSV
>Mature_427_residues
MFRERPMLLPGSVFTRTASQLVRESINSWIDDYAPSMGAALAYYTVFSIAPLLMIVISIAGVIFGPDAARGEVVGELNGL
IGSEGAQAVEEMLVAVSKPAASTVTAILGVLALLVGATTVFSELQSALDRIWRVPQPEKISGLFSLIRSRLLSFGMILGM
GFLLVVSLLLSAGISAMGREWGPLLGIREAVGHVLDTVVSLVLTTVVFAMIYKFMPRTKVRWFDVWLGAVVTAALFTLGK
FLIGLYIGKSGVASGYGAAGSLVVLLLWVYYAAQIFLLGAEFTWHFAQRFGSLRHSGQLPPPARILYRREHTGVDQTVQR
DAGRHPLNGGDGVTTPIVAVYVDEILSAACRAGELGQVTATAIADAAENAFMHFQSLARTDKRELRERLRELSLALSVFA
EAGDLSAETRDLIKLGVADVRAYLDSV

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=264, Percent_Identity=28.4090909090909, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 45963; Mature: 45963

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRERPMLLPGSVFTRTASQLVRESINSWIDDYAPSMGAALAYYTVFSIAPLLMIVISIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVIFGPDAARGEVVGELNGLIGSEGAQAVEEMLVAVSKPAASTVTAILGVLALLVGATTV
HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FSELQSALDRIWRVPQPEKISGLFSLIRSRLLSFGMILGMGFLLVVSLLLSAGISAMGRE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHH
WGPLLGIREAVGHVLDTVVSLVLTTVVFAMIYKFMPRTKVRWFDVWLGAVVTAALFTLGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
FLIGLYIGKSGVASGYGAAGSLVVLLLWVYYAAQIFLLGAEFTWHFAQRFGSLRHSGQLP
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PPARILYRREHTGVDQTVQRDAGRHPLNGGDGVTTPIVAVYVDEILSAACRAGELGQVTA
CHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
TAIADAAENAFMHFQSLARTDKRELRERLRELSLALSVFAEAGDLSAETRDLIKLGVADV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RAYLDSV
HHHHHCC
>Mature Secondary Structure
MFRERPMLLPGSVFTRTASQLVRESINSWIDDYAPSMGAALAYYTVFSIAPLLMIVISIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVIFGPDAARGEVVGELNGLIGSEGAQAVEEMLVAVSKPAASTVTAILGVLALLVGATTV
HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FSELQSALDRIWRVPQPEKISGLFSLIRSRLLSFGMILGMGFLLVVSLLLSAGISAMGRE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHH
WGPLLGIREAVGHVLDTVVSLVLTTVVFAMIYKFMPRTKVRWFDVWLGAVVTAALFTLGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
FLIGLYIGKSGVASGYGAAGSLVVLLLWVYYAAQIFLLGAEFTWHFAQRFGSLRHSGQLP
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PPARILYRREHTGVDQTVQRDAGRHPLNGGDGVTTPIVAVYVDEILSAACRAGELGQVTA
CHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
TAIADAAENAFMHFQSLARTDKRELRERLRELSLALSVFAEAGDLSAETRDLIKLGVADV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RAYLDSV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA