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The map label for this gene is rfaQ [H]

Identifier: 73538212

GI number: 73538212

Start: 1039241

End: 1040413

Strand: Reverse

Name: rfaQ [H]

Synonym: Reut_B4383

Alternate gene names: 73538212

Gene position: 1040413-1039241 (Counterclockwise)

Preceding gene: 73538213

Following gene: 73538211

Centisome position: 38.16

GC content: 69.22

Gene sequence:

>1173_bases
ATGAATGCGCCGCTGCTGTTACGGAACGTGGGACGAGGCGAAAGCACGGAATCCGGGGCAGTGCCGCCCGCAGTGCTGCC
GCCGGTGCAGCCATCGCCGACAACGCTCCAGGCGCCGGACCACGCCGCGCGCCGCCGCATCGCGGTGTTCCGCGCGCTGC
AGCTCGGCGACATGCTGTGTGCGGTTCCGGCGCTGCGCGCGTTGCGCGAAGGCGAACCGGACGCGCATATCACACTGATC
GGCCTGCCGTGGGTGCGCGACTTCGCCAGCCGCTTCGGCAGCCTGATCGATGACGTGATGGTCTTCCCCGGCGCACCAGG
CTTTCCGGAGCGGCCCTACGACGCGGCAGCGCTGGCGGCTTTCCATGCGGAGGCCCGCGCGCGGCGGTTTGACCTTGCCA
TCCAGCTGCACGGCAGCGGCACGTTGAGCAATGACGTCGTGCGGCAACTTGGGGCCCGGACGATCGCGGGCTTCTGCCCC
ACCTCTGCGGAAGCCGCGCTGGCGAACGAGCACGAACGCCTGCTGCCATGGCCCGGCGGCAACGAGATCGAACGCCTTCT
GGGCCTGATGCGGGCGCTGGGCTACCCGGTCGTTGACGCGCATCTCGCGTTTCCGTTGCGGCCGCAGGACCATGCCGGCT
GGCAACGTCTTGCCGAACTGCACGGGCTGGTGGGCGGCGAGTACATCTGCGTGCATCCCGGCGCGCGGATGCTTTCGCGC
CGCTGGCCCGTGGAGCGCTTTGCGGACGTTGCGCTGCGGCTGCGCAAGCGCTGGAGGATTGTGGTGACAGGAGCGCCGGA
CGAAATCATGCTCACGCACCGCCTTTGCGAGCTGATCGGTGGAGACGTAGTGAATCTGACGGCCGCCACGCCGCTGGGCG
AACTGGCCGCGCTGATCGCGCATGCGCGGCTGCTGCTGTGCAACGATACCGGGCCATCGCATATCGCCGCGGCGCTGGAT
ACGCCGAGCGTCGTGGTTTCATGCGGCGGCGACAGCGATCGCTGGGCGCCATTGGATGCCACGCTGCACCACGTGCTGGC
TTCCTATCCGCCGTGCCGGCCCTGCAACTGGCAGAAGTGCCCGATCCGGCACGAGTGCGCGACCGCCATCACCGTCGACG
CGGTGGAAGCCGAGGCGCTGAGCCTGGCTTCGCGGGGCCACGATCATGCCTAG

Upstream 100 bases:

>100_bases
CATCACACGTTGCCGAAATGGTCGTCACGTCGATCCTCATTCCGCCGTTATCACTGTACTGGCGCTTGCGCGGCGCGCTG
GCCTTCCAGACGAGGTTCTT

Downstream 100 bases:

>100_bases
GCGCCTGCGTATCCTCACGTGGCACGTTCACGGCAACTACATGTATTACCTGTCGCAGGTACCGCACGAGTTCTTCCTGG
TGACGCGTCCGGGCTATCCG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MNAPLLLRNVGRGESTESGAVPPAVLPPVQPSPTTLQAPDHAARRRIAVFRALQLGDMLCAVPALRALREGEPDAHITLI
GLPWVRDFASRFGSLIDDVMVFPGAPGFPERPYDAAALAAFHAEARARRFDLAIQLHGSGTLSNDVVRQLGARTIAGFCP
TSAEAALANEHERLLPWPGGNEIERLLGLMRALGYPVVDAHLAFPLRPQDHAGWQRLAELHGLVGGEYICVHPGARMLSR
RWPVERFADVALRLRKRWRIVVTGAPDEIMLTHRLCELIGGDVVNLTAATPLGELAALIAHARLLLCNDTGPSHIAAALD
TPSVVVSCGGDSDRWAPLDATLHHVLASYPPCRPCNWQKCPIRHECATAITVDAVEAEALSLASRGHDHA

Sequences:

>Translated_390_residues
MNAPLLLRNVGRGESTESGAVPPAVLPPVQPSPTTLQAPDHAARRRIAVFRALQLGDMLCAVPALRALREGEPDAHITLI
GLPWVRDFASRFGSLIDDVMVFPGAPGFPERPYDAAALAAFHAEARARRFDLAIQLHGSGTLSNDVVRQLGARTIAGFCP
TSAEAALANEHERLLPWPGGNEIERLLGLMRALGYPVVDAHLAFPLRPQDHAGWQRLAELHGLVGGEYICVHPGARMLSR
RWPVERFADVALRLRKRWRIVVTGAPDEIMLTHRLCELIGGDVVNLTAATPLGELAALIAHARLLLCNDTGPSHIAAALD
TPSVVVSCGGDSDRWAPLDATLHHVLASYPPCRPCNWQKCPIRHECATAITVDAVEAEALSLASRGHDHA
>Mature_390_residues
MNAPLLLRNVGRGESTESGAVPPAVLPPVQPSPTTLQAPDHAARRRIAVFRALQLGDMLCAVPALRALREGEPDAHITLI
GLPWVRDFASRFGSLIDDVMVFPGAPGFPERPYDAAALAAFHAEARARRFDLAIQLHGSGTLSNDVVRQLGARTIAGFCP
TSAEAALANEHERLLPWPGGNEIERLLGLMRALGYPVVDAHLAFPLRPQDHAGWQRLAELHGLVGGEYICVHPGARMLSR
RWPVERFADVALRLRKRWRIVVTGAPDEIMLTHRLCELIGGDVVNLTAATPLGELAALIAHARLLLCNDTGPSHIAAALD
TPSVVVSCGGDSDRWAPLDATLHHVLASYPPCRPCNWQKCPIRHECATAITVDAVEAEALSLASRGHDHA

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=322, Percent_Identity=27.0186335403727, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42057; Mature: 42057

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPLLLRNVGRGESTESGAVPPAVLPPVQPSPTTLQAPDHAARRRIAVFRALQLGDMLC
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
AVPALRALREGEPDAHITLIGLPWVRDFASRFGSLIDDVMVFPGAPGFPERPYDAAALAA
HHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
FHAEARARRFDLAIQLHGSGTLSNDVVRQLGARTIAGFCPTSAEAALANEHERLLPWPGG
HHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC
NEIERLLGLMRALGYPVVDAHLAFPLRPQDHAGWQRLAELHGLVGGEYICVHPGARMLSR
HHHHHHHHHHHHHCCCEEEHEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHH
RWPVERFADVALRLRKRWRIVVTGAPDEIMLTHRLCELIGGDVVNLTAATPLGELAALIA
CCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
HARLLLCNDTGPSHIAAALDTPSVVVSCGGDSDRWAPLDATLHHVLASYPPCRPCNWQKC
HCEEEEECCCCHHHEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PIRHECATAITVDAVEAEALSLASRGHDHA
CCCHHHHHEEEEEHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNAPLLLRNVGRGESTESGAVPPAVLPPVQPSPTTLQAPDHAARRRIAVFRALQLGDMLC
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
AVPALRALREGEPDAHITLIGLPWVRDFASRFGSLIDDVMVFPGAPGFPERPYDAAALAA
HHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
FHAEARARRFDLAIQLHGSGTLSNDVVRQLGARTIAGFCPTSAEAALANEHERLLPWPGG
HHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC
NEIERLLGLMRALGYPVVDAHLAFPLRPQDHAGWQRLAELHGLVGGEYICVHPGARMLSR
HHHHHHHHHHHHHCCCEEEHEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHH
RWPVERFADVALRLRKRWRIVVTGAPDEIMLTHRLCELIGGDVVNLTAATPLGELAALIA
CCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
HARLLLCNDTGPSHIAAALDTPSVVVSCGGDSDRWAPLDATLHHVLASYPPCRPCNWQKC
HCEEEEECCCCHHHEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PIRHECATAITVDAVEAEALSLASRGHDHA
CCCHHHHHEEEEEHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA