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The map label for this gene is srpC [H]

Identifier: 73538163

GI number: 73538163

Start: 989853

End: 991352

Strand: Reverse

Name: srpC [H]

Synonym: Reut_B4333

Alternate gene names: 73538163

Gene position: 991352-989853 (Counterclockwise)

Preceding gene: 73538164

Following gene: 73538162

Centisome position: 36.36

GC content: 69.27

Gene sequence:

>1500_bases
ATGAACAACAACATGATGAAGCAGTACCTGCCCAGGCTTGCGACATTGGCCGCCGCGCTGGTGCTCGCCGGTTGCTCGTT
GGCGCCGACCTACAAGGTGCCGGAAACGCCCACCGCCGCGACCTTCAAGGAGGCCGACGCCGCGGCCGCCGAAGGCGCGC
AGTGGAAGACCGCCGCGCCGGCCGAAGGCCAGCATCGCGGCGACTGGTGGAAGATCTTTGGCGACGCCGAGCTGGACCGG
CTGATCGACGCGGCCAACAGCTACAACCAGGATCTCGCTGCCGCTGCGGCGCGCCTGAAGCAGGCGCGGGCATTCACCGG
CGCGACGGAAGCGGACCTGTATCCGCAGCTGAGCGTCGGACTCGATCCGACGCGTTCGCAGCCGTCGGCCGCTTCGCAGG
GTTTGCCGGATGGCACGCGCGTGGCGCCGCAGACGGTGCTCAAGGCGCGGGCCTTTGCCAGCTACGAGCTTGACCTGTTC
GGCCGTGTGGCCAGCAGCGTGAACGCGGCCCGCGCCGACGAGCAGGGCGCCGAAGACCTGTACCGTTCGGTGCAGCTCGC
GCTGCAAGCCGACACGGCGCAGGCGTACTTTGCGCTGCGCACGCTGGACAGCGAACGTAATCTGCTCAACGCGACGATCA
AGCTGCGTGAAGATGCGCTGAACTTGCTGCGCAAGCGCTATGAAGCAGGCGAAACGACGGATCTGGACCCCGCCCGCGCC
GAAGCCGAACTCGGCACCGCGCGAGCCGACCTGGCCGGTATCGAGCGTCGCCGCGCCAACCAGGAACATGCGCTGGCGGT
GCTGACCGGCGTGTCGCCGTCGCAGTTCGGGCTCGCCGCGAAGCCGTTCGACACGGCACCTGTGGCGGTGCCGGCAGGCT
TGCCGTCGGAACTGCTCGAACGCCGCCCTGACATCACGGCAGCGGAGCGGCAGATGGCAGCCGCCAATGCGCGGATCGGT
GTGGCGAAGGCAGCGTTTTTCCCGCGCATTTCGCTCACGGCGCTGTTCGGCTTCGAGTCGGCGGACCTGTCAAACCTGTT
CAAGTGGTCGTCGCGCACATGGATGCTTGGCCCGTTGCTGGGGTCGACGGTGGCGCAGACCGTATTCGACGGCGGCCGCA
ACAGCTCGAACCTTGCCGGCGCCCGCGCTGCGCATGAAGAGAGCGTGGCGCGCTACCGGCAGACCGTACTCGTGGCGTTC
CGCGAGGTCGAGGACAGCCTTGCCGATGTACGTTGGCTCAGCCAGCAGGCCACGGCACTCGACAGCGCGCTGGCGGGTGC
CCGGCGCGCCCAGCGTACCTCGCGCAGCCGCTATGACGCGGGCGCCGTCGATTACCTGACGGTGATCGATGCCGACCGGA
CCGTGCTGCAATCGCAGCGCGATGCCAATGCGGTGGCCGGGCTGCGCGCGGCGGCGACCGTGGCGCTGGTGCGCAGTCTC
GGCGGCGGCTGGGGGCCGGTGCCGGAGTCGGTGGCGTCCGCGTCGGCACCCGCGCAGTAA

Upstream 100 bases:

>100_bases
CGCTGCGTTTGCTGGCTACGCGCAAGCAGCGCCGGGAAGCGGCGGCGGCCGGTGCTTCGGCATCGCACGCCGTGCCGTCG
GCAGAATGATGGTGAACGAC

Downstream 100 bases:

>100_bases
TATCGGGCGCCCGGCAAGTGCCGCAGGGGTGGCGCGATGCAATCGGATCACTACACTGAATGCATTGCGCCGCTCCCGAA
TGCGCGCGGCACCTGCCATG

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MNNNMMKQYLPRLATLAAALVLAGCSLAPTYKVPETPTAATFKEADAAAAEGAQWKTAAPAEGQHRGDWWKIFGDAELDR
LIDAANSYNQDLAAAAARLKQARAFTGATEADLYPQLSVGLDPTRSQPSAASQGLPDGTRVAPQTVLKARAFASYELDLF
GRVASSVNAARADEQGAEDLYRSVQLALQADTAQAYFALRTLDSERNLLNATIKLREDALNLLRKRYEAGETTDLDPARA
EAELGTARADLAGIERRRANQEHALAVLTGVSPSQFGLAAKPFDTAPVAVPAGLPSELLERRPDITAAERQMAAANARIG
VAKAAFFPRISLTALFGFESADLSNLFKWSSRTWMLGPLLGSTVAQTVFDGGRNSSNLAGARAAHEESVARYRQTVLVAF
REVEDSLADVRWLSQQATALDSALAGARRAQRTSRSRYDAGAVDYLTVIDADRTVLQSQRDANAVAGLRAAATVALVRSL
GGGWGPVPESVASASAPAQ

Sequences:

>Translated_499_residues
MNNNMMKQYLPRLATLAAALVLAGCSLAPTYKVPETPTAATFKEADAAAAEGAQWKTAAPAEGQHRGDWWKIFGDAELDR
LIDAANSYNQDLAAAAARLKQARAFTGATEADLYPQLSVGLDPTRSQPSAASQGLPDGTRVAPQTVLKARAFASYELDLF
GRVASSVNAARADEQGAEDLYRSVQLALQADTAQAYFALRTLDSERNLLNATIKLREDALNLLRKRYEAGETTDLDPARA
EAELGTARADLAGIERRRANQEHALAVLTGVSPSQFGLAAKPFDTAPVAVPAGLPSELLERRPDITAAERQMAAANARIG
VAKAAFFPRISLTALFGFESADLSNLFKWSSRTWMLGPLLGSTVAQTVFDGGRNSSNLAGARAAHEESVARYRQTVLVAF
REVEDSLADVRWLSQQATALDSALAGARRAQRTSRSRYDAGAVDYLTVIDADRTVLQSQRDANAVAGLRAAATVALVRSL
GGGWGPVPESVASASAPAQ
>Mature_499_residues
MNNNMMKQYLPRLATLAAALVLAGCSLAPTYKVPETPTAATFKEADAAAAEGAQWKTAAPAEGQHRGDWWKIFGDAELDR
LIDAANSYNQDLAAAAARLKQARAFTGATEADLYPQLSVGLDPTRSQPSAASQGLPDGTRVAPQTVLKARAFASYELDLF
GRVASSVNAARADEQGAEDLYRSVQLALQADTAQAYFALRTLDSERNLLNATIKLREDALNLLRKRYEAGETTDLDPARA
EAELGTARADLAGIERRRANQEHALAVLTGVSPSQFGLAAKPFDTAPVAVPAGLPSELLERRPDITAAERQMAAANARIG
VAKAAFFPRISLTALFGFESADLSNLFKWSSRTWMLGPLLGSTVAQTVFDGGRNSSNLAGARAAHEESVARYRQTVLVAF
REVEDSLADVRWLSQQATALDSALAGARRAQRTSRSRYDAGAVDYLTVIDADRTVLQSQRDANAVAGLRAAATVALVRSL
GGGWGPVPESVASASAPAQ

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=475, Percent_Identity=31.5789473684211, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI2367348, Length=513, Percent_Identity=26.9005847953216, Blast_Score=125, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 53085; Mature: 53085

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNMMKQYLPRLATLAAALVLAGCSLAPTYKVPETPTAATFKEADAAAAEGAQWKTAAP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
AEGQHRGDWWKIFGDAELDRLIDAANSYNQDLAAAAARLKQARAFTGATEADLYPQLSVG
CCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC
LDPTRSQPSAASQGLPDGTRVAPQTVLKARAFASYELDLFGRVASSVNAARADEQGAEDL
CCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
YRSVQLALQADTAQAYFALRTLDSERNLLNATIKLREDALNLLRKRYEAGETTDLDPARA
HHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
EAELGTARADLAGIERRRANQEHALAVLTGVSPSQFGLAAKPFDTAPVAVPAGLPSELLE
HHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCHHHCCCCCCCCCCCCEEECCCCCHHHHH
RRPDITAAERQMAAANARIGVAKAAFFPRISLTALFGFESADLSNLFKWSSRTWMLGPLL
CCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHEECCCHHHHHHHHHHCCCCEEEHHHH
GSTVAQTVFDGGRNSSNLAGARAAHEESVARYRQTVLVAFREVEDSLADVRWLSQQATAL
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSALAGARRAQRTSRSRYDAGAVDYLTVIDADRTVLQSQRDANAVAGLRAAATVALVRSL
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGGWGPVPESVASASAPAQ
CCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MNNNMMKQYLPRLATLAAALVLAGCSLAPTYKVPETPTAATFKEADAAAAEGAQWKTAAP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
AEGQHRGDWWKIFGDAELDRLIDAANSYNQDLAAAAARLKQARAFTGATEADLYPQLSVG
CCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC
LDPTRSQPSAASQGLPDGTRVAPQTVLKARAFASYELDLFGRVASSVNAARADEQGAEDL
CCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
YRSVQLALQADTAQAYFALRTLDSERNLLNATIKLREDALNLLRKRYEAGETTDLDPARA
HHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
EAELGTARADLAGIERRRANQEHALAVLTGVSPSQFGLAAKPFDTAPVAVPAGLPSELLE
HHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCHHHCCCCCCCCCCCCEEECCCCCHHHHH
RRPDITAAERQMAAANARIGVAKAAFFPRISLTALFGFESADLSNLFKWSSRTWMLGPLL
CCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHEECCCHHHHHHHHHHCCCCEEEHHHH
GSTVAQTVFDGGRNSSNLAGARAAHEESVARYRQTVLVAFREVEDSLADVRWLSQQATAL
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSALAGARRAQRTSRSRYDAGAVDYLTVIDADRTVLQSQRDANAVAGLRAAATVALVRSL
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGGWGPVPESVASASAPAQ
CCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]