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The map label for this gene is phnF [C]

Identifier: 73538015

GI number: 73538015

Start: 827360

End: 828109

Strand: Reverse

Name: phnF [C]

Synonym: Reut_B4185

Alternate gene names: 73538015

Gene position: 828109-827360 (Counterclockwise)

Preceding gene: 73538023

Following gene: 73538014

Centisome position: 30.38

GC content: 63.87

Gene sequence:

>750_bases
ATGTCTGATCAGGAAGTCGAACGAGGTTCCGGCGTTGCGGTATGGCGCCAGATTGGCGAGGCGCTGGCGCAGGATATCCG
CAACAAGCTGTATGGCCCCGGCGAGCAACTGCCGCCTGAGCCCGAGCTGGCCAGCCGGTTCGCGGTGAACCGCCATACCA
TCCGCCGCGCCATGGGCGAGCTGGAGCTGAATGGTCTCGTGCGGATCGAGCAGGGCCGCGGCACGTTCGTCCAGGAACAT
GCGATCGACTATGCGATCGGTCGCCGCACACGTTTTTCGCAGAACCTGGCGGCACAGGGCATGCGCGGCCACGTCGAGAT
TCTCGAAAGCAGCATGGTGCGCGCGCCCGAGGTCGCCAAGCAGCTGGGCCTGCCGCGTACGGCGGACATCCTGCACGTCC
AGGTGATCGGCAAGGCCGAAGCACGCACCATCGACGTCGCCGAGCATTACTTCGATGGCAAGCGCTTTCCGGCTTTGGCT
GACGAGATCCGGGAGCAACTGTCGATCTCGCGCGCGCTCGCGCACTTCGGCATTGCCGACTACACACGCAAGTGGTCGCG
CATCACCGCGTCGATGCCGAGCGCACCGGTCGCACGCCTGCTGAACCAGCCGAAGACGCGCCCCGTGCTTCAAGTGGAAG
CACTCAACGTGGATATCGACGGTGCACCGCTGCAATACAGCATGACCCGTTTTGCAGGAGACTGGGTGCAGCTCACCGTT
TCCGACAGCGAATCGCCAGTCATTCCATGA

Upstream 100 bases:

>100_bases
ACCGGATAAACACACGCGAGCCGACGCAGCACTCCAGTGAAATTCGTTCCGGTGAAGGCTTGATGACAAAAGGCAAGGCA
ACACTAGGCAAGGCAAGACG

Downstream 100 bases:

>100_bases
AGCCCGGAGACGCGCCAGCGCAACCGGCCAACGTGATATTGGTCTAGACATCTGGCCGTCATCTACGCGCGCTAACTTGC
TATCCATGCATACCACTAGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSDQEVERGSGVAVWRQIGEALAQDIRNKLYGPGEQLPPEPELASRFAVNRHTIRRAMGELELNGLVRIEQGRGTFVQEH
AIDYAIGRRTRFSQNLAAQGMRGHVEILESSMVRAPEVAKQLGLPRTADILHVQVIGKAEARTIDVAEHYFDGKRFPALA
DEIREQLSISRALAHFGIADYTRKWSRITASMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPLQYSMTRFAGDWVQLTV
SDSESPVIP

Sequences:

>Translated_249_residues
MSDQEVERGSGVAVWRQIGEALAQDIRNKLYGPGEQLPPEPELASRFAVNRHTIRRAMGELELNGLVRIEQGRGTFVQEH
AIDYAIGRRTRFSQNLAAQGMRGHVEILESSMVRAPEVAKQLGLPRTADILHVQVIGKAEARTIDVAEHYFDGKRFPALA
DEIREQLSISRALAHFGIADYTRKWSRITASMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPLQYSMTRFAGDWVQLTV
SDSESPVIP
>Mature_248_residues
SDQEVERGSGVAVWRQIGEALAQDIRNKLYGPGEQLPPEPELASRFAVNRHTIRRAMGELELNGLVRIEQGRGTFVQEHA
IDYAIGRRTRFSQNLAAQGMRGHVEILESSMVRAPEVAKQLGLPRTADILHVQVIGKAEARTIDVAEHYFDGKRFPALAD
EIREQLSISRALAHFGIADYTRKWSRITASMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPLQYSMTRFAGDWVQLTVS
DSESPVIP

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=237, Percent_Identity=32.0675105485232, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082252, Length=238, Percent_Identity=23.5294117647059, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788418, Length=225, Percent_Identity=24, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27685; Mature: 27554

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQEVERGSGVAVWRQIGEALAQDIRNKLYGPGEQLPPEPELASRFAVNRHTIRRAMGE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LELNGLVRIEQGRGTFVQEHAIDYAIGRRTRFSQNLAAQGMRGHVEILESSMVRAPEVAK
HCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
QLGLPRTADILHVQVIGKAEARTIDVAEHYFDGKRFPALADEIREQLSISRALAHFGIAD
HHCCCCCCCEEEEEEECCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHH
YTRKWSRITASMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPLQYSMTRFAGDWVQLTV
HHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHCCCEEEEEE
SDSESPVIP
CCCCCCCCC
>Mature Secondary Structure 
SDQEVERGSGVAVWRQIGEALAQDIRNKLYGPGEQLPPEPELASRFAVNRHTIRRAMGE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LELNGLVRIEQGRGTFVQEHAIDYAIGRRTRFSQNLAAQGMRGHVEILESSMVRAPEVAK
HCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
QLGLPRTADILHVQVIGKAEARTIDVAEHYFDGKRFPALADEIREQLSISRALAHFGIAD
HHCCCCCCCEEEEEEECCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHH
YTRKWSRITASMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPLQYSMTRFAGDWVQLTV
HHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHCCCEEEEEE
SDSESPVIP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]