Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 73537988

GI number: 73537988

Start: 797216

End: 797986

Strand: Reverse

Name: yvoA [H]

Synonym: Reut_B4157

Alternate gene names: 73537988

Gene position: 797986-797216 (Counterclockwise)

Preceding gene: 73537992

Following gene: 73537980

Centisome position: 29.27

GC content: 64.72

Gene sequence:

>771_bases
ATGATAGGTATAATCCCTGAGCATCCTTCCACCACTACTGCGCAAGCCAGAGGAAACCCCGTGACGCTGCCGAGATTCAA
GGAGATCGAACAGGAACTTCGCCAGCGCATCGTCGACAACGCGTGGGCGCCCGGCGCGAAGCTGCCGTCGGAATCCGAAC
TGACGACGGAGTTCTCGGTGAGCCGCATTACCGTGCGCCAGGCGCTGGCCGGGCTGCACAATGCGGGCCTGATCGAGAAG
GTCAACGGGAAGGGGAGCTTCGTCACGCGGCCGTCCGAAAGGCCGGACCTTGGACCGCTGAGCGGCTTCTACGAGGCGGG
CAGGGCCAAGGGCAAGCTCGCCTACGGCAAGCTGCTGTCGGCCCGCATGATCAAGGCCCCGGCCTTTGCGGCAGCGTCGC
TGGGACTGGACCCGGGCGAACGTGTGTTCTGCATCACCACGGTGCGGTTCTGGGACGACGCCCCGGTCGGATACTTCCAG
GTGATGGGCCCGGAGGCGCGCATGCGCCGCATTGCGGAGGAGGATCTGGAGACCAACGACGTAATGACGCTGCTGGAAAC
CCGGCTCGGTTTCCGCCTGAAGGAACTGACGTGCGAATCCACGGCCATTGCGGCCAGCGGAGAGGTGGCACGGCGGCTCG
ACGTGCCCGAAGGGTTCCCGCTGCTGCGCATCCGCAGCACACCCTTCGATATCGAGGGCCACCCCTTGTTGTGCGCCGAG
CTCTATTTTCGGGGTGACCGCTTCAGCTACAAGTGGACGCTGACGCGCTAG

Upstream 100 bases:

>100_bases
GCGAGCTGGTTGTGATGGGCCGCCCCTTCGTCGTGGGTGCGACCCCTAAGTCGTGACACAACCTGTTATAACAGGTTACC
GATGCATGTAGAGGCCTGTT

Downstream 100 bases:

>100_bases
CGACACCGCCCTTTGCGCATCATCCGCGCATCATCCGCGCTGAGGCAGTTTCCAGCCTGGCCGGATGAAGTGGCATGTGT
AGCCGTTCGGATAGCGTTCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MIGIIPEHPSTTTAQARGNPVTLPRFKEIEQELRQRIVDNAWAPGAKLPSESELTTEFSVSRITVRQALAGLHNAGLIEK
VNGKGSFVTRPSERPDLGPLSGFYEAGRAKGKLAYGKLLSARMIKAPAFAAASLGLDPGERVFCITTVRFWDDAPVGYFQ
VMGPEARMRRIAEEDLETNDVMTLLETRLGFRLKELTCESTAIAASGEVARRLDVPEGFPLLRIRSTPFDIEGHPLLCAE
LYFRGDRFSYKWTLTR

Sequences:

>Translated_256_residues
MIGIIPEHPSTTTAQARGNPVTLPRFKEIEQELRQRIVDNAWAPGAKLPSESELTTEFSVSRITVRQALAGLHNAGLIEK
VNGKGSFVTRPSERPDLGPLSGFYEAGRAKGKLAYGKLLSARMIKAPAFAAASLGLDPGERVFCITTVRFWDDAPVGYFQ
VMGPEARMRRIAEEDLETNDVMTLLETRLGFRLKELTCESTAIAASGEVARRLDVPEGFPLLRIRSTPFDIEGHPLLCAE
LYFRGDRFSYKWTLTR
>Mature_256_residues
MIGIIPEHPSTTTAQARGNPVTLPRFKEIEQELRQRIVDNAWAPGAKLPSESELTTEFSVSRITVRQALAGLHNAGLIEK
VNGKGSFVTRPSERPDLGPLSGFYEAGRAKGKLAYGKLLSARMIKAPAFAAASLGLDPGERVFCITTVRFWDDAPVGYFQ
VMGPEARMRRIAEEDLETNDVMTLLETRLGFRLKELTCESTAIAASGEVARRLDVPEGFPLLRIRSTPFDIEGHPLLCAE
LYFRGDRFSYKWTLTR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=221, Percent_Identity=28.5067873303167, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=26.8398268398268, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=25.974025974026, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789621, Length=88, Percent_Identity=40.9090909090909, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28396; Mature: 28396

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGIIPEHPSTTTAQARGNPVTLPRFKEIEQELRQRIVDNAWAPGAKLPSESELTTEFSV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
SRITVRQALAGLHNAGLIEKVNGKGSFVTRPSERPDLGPLSGFYEAGRAKGKLAYGKLLS
HHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHH
ARMIKAPAFAAASLGLDPGERVFCITTVRFWDDAPVGYFQVMGPEARMRRIAEEDLETND
HHHHHCCCHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCHHH
VMTLLETRLGFRLKELTCESTAIAASGEVARRLDVPEGFPLLRIRSTPFDIEGHPLLCAE
HHHHHHHHHCCEEEHHCCCCCEEECCCHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEE
LYFRGDRFSYKWTLTR
EEECCCCEEEEEEECC
>Mature Secondary Structure
MIGIIPEHPSTTTAQARGNPVTLPRFKEIEQELRQRIVDNAWAPGAKLPSESELTTEFSV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
SRITVRQALAGLHNAGLIEKVNGKGSFVTRPSERPDLGPLSGFYEAGRAKGKLAYGKLLS
HHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHH
ARMIKAPAFAAASLGLDPGERVFCITTVRFWDDAPVGYFQVMGPEARMRRIAEEDLETND
HHHHHCCCHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCHHH
VMTLLETRLGFRLKELTCESTAIAASGEVARRLDVPEGFPLLRIRSTPFDIEGHPLLCAE
HHHHHHHHHCCEEEHHCCCCCEEECCCHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEE
LYFRGDRFSYKWTLTR
EEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]