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The map label for this gene is tdcF [C]

Identifier: 73537852

GI number: 73537852

Start: 659436

End: 659828

Strand: Reverse

Name: tdcF [C]

Synonym: Reut_B4019

Alternate gene names: 73537852

Gene position: 659828-659436 (Counterclockwise)

Preceding gene: 73537853

Following gene: 73537851

Centisome position: 24.2

GC content: 64.63

Gene sequence:

>393_bases
ATGGATATCAAACGATTCGGCGTAGAAGGCGGCACCGGCCAGGGCGGCCAGCACATGCCGTTTGCCCGCGCAGTGGCCGC
AGACGGCTGGCTCTACGTGTCCGGCCAGGTGCCGATGGTCAATGGCGAACTGGTCGACGGCGGCATCGTGCCGCAAACGC
ACCAGGCCATCAAAAACGTGCTGGCCATCCTGGCCGAAGCCGGCTACGGCCCCGAGCACGTGGTGCGTTGCGGGGTCTGG
CTGGACGACGCGCGCGACTTTGCCTCGTTCAACAAGATCTTCAAGGAATACTTCGGCGCCAACCCGCCAGCCCGCGCCTG
CGTGCAGTCCAGCATGGTGGTGGACTGCAAGGTCGAAGTGGACTGCATCGCGTACAAGAAGCCGGCAGCGTGA

Upstream 100 bases:

>100_bases
CAGCCCACCGGCGTGCGCGCCGGCCGGTTCCTGCCGCGCGGCGCCCAGCCCGCGGCGTGACTTCTCTCTCTTCTTGTTTC
ACCCGATTTCAGGAGCATTT

Downstream 100 bases:

>100_bases
GCCAGTTGCCTGCTGATTGCCTTATTGCCTGACTGTCTGACTGTCTGATTGCGCTTTCCCCGCCCGCGACCCGGGCGGGA
CATGAACTGAACTACAAACA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MDIKRFGVEGGTGQGGQHMPFARAVAADGWLYVSGQVPMVNGELVDGGIVPQTHQAIKNVLAILAEAGYGPEHVVRCGVW
LDDARDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEVDCIAYKKPAA

Sequences:

>Translated_130_residues
MDIKRFGVEGGTGQGGQHMPFARAVAADGWLYVSGQVPMVNGELVDGGIVPQTHQAIKNVLAILAEAGYGPEHVVRCGVW
LDDARDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEVDCIAYKKPAA
>Mature_130_residues
MDIKRFGVEGGTGQGGQHMPFARAVAADGWLYVSGQVPMVNGELVDGGIVPQTHQAIKNVLAILAEAGYGPEHVVRCGVW
LDDARDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEVDCIAYKKPAA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=112, Percent_Identity=38.3928571428571, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=30.0884955752212, Blast_Score=62, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=108, Percent_Identity=35.1851851851852, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=108, Percent_Identity=35.1851851851852, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71982068, Length=108, Percent_Identity=35.1851851851852, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=109, Percent_Identity=33.9449541284404, Blast_Score=79, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=6e-13,
Organism=Drosophila melanogaster, GI19921376, Length=108, Percent_Identity=37.037037037037, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13928; Mature: 13928

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKRFGVEGGTGQGGQHMPFARAVAADGWLYVSGQVPMVNGELVDGGIVPQTHQAIKNV
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCEEECCEEECCCCCCHHHHHHHHH
LAILAEAGYGPEHVVRCGVWLDDARDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEV
HHHHHHCCCCHHHEEEECCEECCHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEEEEEE
DCIAYKKPAA
EEEECCCCCC
>Mature Secondary Structure
MDIKRFGVEGGTGQGGQHMPFARAVAADGWLYVSGQVPMVNGELVDGGIVPQTHQAIKNV
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCEEECCEEECCCCCCHHHHHHHHH
LAILAEAGYGPEHVVRCGVWLDDARDFASFNKIFKEYFGANPPARACVQSSMVVDCKVEV
HHHHHHCCCCHHHEEEECCEECCHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEEEEEE
DCIAYKKPAA
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]