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The map label for this gene is ybhD [H]

Identifier: 73537788

GI number: 73537788

Start: 590244

End: 591185

Strand: Reverse

Name: ybhD [H]

Synonym: Reut_B3955

Alternate gene names: 73537788

Gene position: 591185-590244 (Counterclockwise)

Preceding gene: 73537791

Following gene: 73537787

Centisome position: 21.69

GC content: 69.75

Gene sequence:

>942_bases
ATGAAGATCAACCTGTCGATGCGTGACATCGAGACCACGCTGGTACTCGCCCGCACGCTGAATTTCCGTCAGGCGGCCAG
CCAACTGCACCTGTCGCAATCCGCCTTGTCCACCCAGATCCTGCGCATCGAGGAATCGCTCGGCGTGCGGCTGTTCGACC
GCACCACGCGCACGGTACGGCTCACCGCGGCTGGCGCGGTGTTCATGCAGCAGGCCGCGCTGCTGCAGGCGGCGTTCCGT
GGTGCGATCGACGCCGTCACCGGCATAGCAAGCGCCGAGCGCGGGCAGGTGGCCGTGGCGGCGCTGCCGTCACTGGCGGC
GCGCATGCTGCCGCGCGTGCTGATGGCCTACCACCGCGCGCGTCCCGAAGTGGCGCTGAAGGTGTTCGATACGCTATCCG
GCCCGGCGTTCGACATGGTCCGCGCTGGCGAGGTCGATTTCGCGCTGACCGCGGCCGATCCGCAGCAGGCCGACCTGCAC
TACGAACCGCTGCTGTCCGACCGCTTCGTGCTGCTGATCCCGGCCGCGCACGCGATGGCGCGCGGCTCGGGCCCGCTACG
CTGGGCCGACACCGCGAGCGCGCCGCATGTATCGATGACGAATCCGAGCAGCGTGCGCCAATACACGGAATGGGCCTTCC
TGCAAAACCGCATCCGCTTCCAGCCCGTGTTCGAGGCCGAGCACCTGGCGACCATCGCGGCAATGGTCGAATGCGGCTTC
GGCGTCGCCGCGCTGCCGGAGATCGCCGCCGGCACGGTACGCCAGCCGGGCATCGTCGAGCGGCTGCTCACGGCACCCGT
AACAGAGCGGTCGATCGGCCTCGTCACCCCGCGCAACCGCAGCCTGTCGCCGGCGGCGGCTGAATTGGCCGATGCCGTGC
GCGTGCACCTGGCCCAGTTCCGTGAACAGCCGGAGGCAGCCGGCGCCGGGGTGGGCGCATGA

Upstream 100 bases:

>100_bases
AGAGAAGGCGCTTTGATTGATGAAGTCGATTCTATGGATAAAATGATCTGAATTCGAGATCAATCAGACGACCCCGGAGC
CCACCCGGGTGCGAGCGCCC

Downstream 100 bases:

>100_bases
GCATCATCGTCGACGTCCTCGTGCTGGCCGGCGTGCTGCTGGCCATCGTGGCCGTAGTGCAGGTCGCCGCCGCGCGGCTG
GTGTTGCCGGAATCGACGCT

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKINLSMRDIETTLVLARTLNFRQAASQLHLSQSALSTQILRIEESLGVRLFDRTTRTVRLTAAGAVFMQQAALLQAAFR
GAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHRARPEVALKVFDTLSGPAFDMVRAGEVDFALTAADPQQADLH
YEPLLSDRFVLLIPAAHAMARGSGPLRWADTASAPHVSMTNPSSVRQYTEWAFLQNRIRFQPVFEAEHLATIAAMVECGF
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTPRNRSLSPAAAELADAVRVHLAQFREQPEAAGAGVGA

Sequences:

>Translated_313_residues
MKINLSMRDIETTLVLARTLNFRQAASQLHLSQSALSTQILRIEESLGVRLFDRTTRTVRLTAAGAVFMQQAALLQAAFR
GAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHRARPEVALKVFDTLSGPAFDMVRAGEVDFALTAADPQQADLH
YEPLLSDRFVLLIPAAHAMARGSGPLRWADTASAPHVSMTNPSSVRQYTEWAFLQNRIRFQPVFEAEHLATIAAMVECGF
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTPRNRSLSPAAAELADAVRVHLAQFREQPEAAGAGVGA
>Mature_313_residues
MKINLSMRDIETTLVLARTLNFRQAASQLHLSQSALSTQILRIEESLGVRLFDRTTRTVRLTAAGAVFMQQAALLQAAFR
GAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHRARPEVALKVFDTLSGPAFDMVRAGEVDFALTAADPQQADLH
YEPLLSDRFVLLIPAAHAMARGSGPLRWADTASAPHVSMTNPSSVRQYTEWAFLQNRIRFQPVFEAEHLATIAAMVECGF
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTPRNRSLSPAAAELADAVRVHLAQFREQPEAAGAGVGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=286, Percent_Identity=27.2727272727273, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=31.740614334471, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790399, Length=292, Percent_Identity=26.027397260274, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI157672245, Length=173, Percent_Identity=32.9479768786127, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788887, Length=177, Percent_Identity=31.0734463276836, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790208, Length=260, Percent_Identity=32.3076923076923, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=27.3743016759777, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789204, Length=293, Percent_Identity=23.8907849829352, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787879, Length=302, Percent_Identity=25.4966887417219, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367136, Length=257, Percent_Identity=26.8482490272374, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=22.972972972973, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787949, Length=316, Percent_Identity=24.6835443037975, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=274, Percent_Identity=28.1021897810219, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=29.2134831460674, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=259, Percent_Identity=24.7104247104247, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787128, Length=146, Percent_Identity=31.5068493150685, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787806, Length=244, Percent_Identity=23.7704918032787, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789506, Length=151, Percent_Identity=27.1523178807947, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33635; Mature: 33635

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINLSMRDIETTLVLARTLNFRQAASQLHLSQSALSTQILRIEESLGVRLFDRTTRTVR
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEE
LTAAGAVFMQQAALLQAAFRGAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHRA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
RPEVALKVFDTLSGPAFDMVRAGEVDFALTAADPQQADLHYEPLLSDRFVLLIPAAHAMA
CCHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHH
RGSGPLRWADTASAPHVSMTNPSSVRQYTEWAFLQNRIRFQPVFEAEHLATIAAMVECGF
CCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTPRNRSLSPAAAELADAVRVHLAQF
CHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
REQPEAAGAGVGA
HCCCCCCCCCCCC
>Mature Secondary Structure
MKINLSMRDIETTLVLARTLNFRQAASQLHLSQSALSTQILRIEESLGVRLFDRTTRTVR
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEE
LTAAGAVFMQQAALLQAAFRGAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHRA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
RPEVALKVFDTLSGPAFDMVRAGEVDFALTAADPQQADLHYEPLLSDRFVLLIPAAHAMA
CCHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHH
RGSGPLRWADTASAPHVSMTNPSSVRQYTEWAFLQNRIRFQPVFEAEHLATIAAMVECGF
CCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTPRNRSLSPAAAELADAVRVHLAQF
CHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
REQPEAAGAGVGA
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]