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The map label for this gene is ycbB [H]

Identifier: 73537776

GI number: 73537776

Start: 575469

End: 577142

Strand: Reverse

Name: ycbB [H]

Synonym: Reut_B3942

Alternate gene names: 73537776

Gene position: 577142-575469 (Counterclockwise)

Preceding gene: 73537777

Following gene: 73537775

Centisome position: 21.17

GC content: 68.52

Gene sequence:

>1674_bases
ATGACACCCGCCACCACGCCTGATACGCGCCTGTCGGCCACCCCCGCCTCCCATGCACGTCACTGGATCGGCGGCACGCT
CGCTGCCTGGCTGCTTGCCTGCGCCGCCAGCGCCGCGGCGCAGCCGCTGTGGTTCGCCAGCGGACGCCCCACGCCCGACG
CCCAGCAGGCGGTGTCCGCACTGGCCAGCGCGCAGACGGATGGCCTGGTGCCGCAGGACTACGATGCCGACGGCCTGAAA
CGCGCGCTCGCCGAAGCCGCCACCGGCCCGCAGCCCGCGCAGGACGCCATCGACAAGCTCGACAACACGCTCAGCGACGC
CATGCGGCGCTACCTGTCGGACCTGCACAGCGGCCGTGTCGATCCACGCAAGGTACACGCCAATTTCACGGCGCCGCCAT
CGACGGCGTTCGAGCCCGACAGTTACCTGCGCGCCGCCGTGGCTGGCCACCGGCTGCCCGAAGCCATCCGCGAGGCCGCA
CCCTCCTTCCCGCTATACGGCACGCTTCGCGACGCGCTTGCGCACTACCGGACGCTGGCCGCGCAACCGGGCTGGGACCG
CACGCTACCGGCTCTGCCCGGCGGCAAGCTGACGAGCGGCCAGGCTTACAGCGGGCTTGCCGAAATGGCGCGGCGCCTGC
AGGCGCTTGGCGACATGCCCGCCGATGCGCCGGCGCCCAAGCGCTATAGCGGTGCGGTCGTGGACGGCGTCAAGGCCTTC
CAGGCACGCCACGGGCTGGAGGCGGATGGCGTGATCGGCGCCGGCACGCTGGCGCAGCTCAATACCACCCCGGCCGCGCG
CGTGCGGCAGATCGAGCTGACCATGGAGCGCCTGCGCTGGACCCCGCTCACCGACAGCCCGCGCATGATCGTGGTGAATA
TCCCCGAGTTTATGCTGCGCGCCTATGACTACAACGGCGGCAAGCTCGATATCAAGCTCGAGATGAAAGTCATCGTCGGC
AAGGCGCTCGATACGCGCACGCCGCTGTTCAAAGAGGACATGCGCTATATCGAGTTCAGTCCGTACTGGAACGTGCCGCC
GTCGATCGCGCGCTCGGAGACCATCCCGAGATTGCGGCGCGATCCGGCCTATTTCACGCAGCAGGGCTTCGAGTTCGTCT
CCAATGGCAAGGCCGTCACCACGCTGTCCGACGCCAACCTGGATGCCGTGCTGAACGGCCGCATGCGCATCCGCCAGCGC
CCCGGCCCGATGAACGCGCTCGGCGACATCAAGTTCGTGTTCCCCAACAATCAGAACATCTACCTGCACCACACCCCCAC
GCCGCAACTGTTCAAGCGCGACCGGCGCGACTTCAGCCACGGCTGCATCCGTGTCGAGGAACCCGTGGCACTGGCGAAGT
TCGTGCTACAGGACATGCCGGGCTGGACCGAAGAACGTATCCGGCAGGCGATGACCAAGGGGCAGTCGAACACCGTGGCG
CTGCAGCAGCCGCTGCCTGTGGTGCTTGCCTACGGCACCGCGATTGCCCGCGCCGATGGCCGGGTATACTTCCTGCCTGA
CATTTATGGCCAGGACAAGCTGCTGGACCAGGCGCTGAGCCAGAAAACCGCGCGCCGGCCCGCCAGTGTGCCGGCATCGG
CACCGGCCGCCCCTGCAACACCGGCCACCCCGGATGCCCTTGCCCGTCCGGCGCCCACGCAGAACCCGACATGA

Upstream 100 bases:

>100_bases
CCTGAATATATTTGCCAAGGCCGCACGATATGCGCGCACGCAACTGGCTATACGAATTATTCGGCTAGGATAGGCAGCAA
GCCATGCCAACTCGATCCCC

Downstream 100 bases:

>100_bases
AGCACACTCGCACTCCCTCCCGCCGCCGTTTCCTGCAACACACCGGCGGCCTGGCGATCGGCGCCGGCCTGGCCGCGTTG
TCGCCGCAACTGGCGCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MTPATTPDTRLSATPASHARHWIGGTLAAWLLACAASAAAQPLWFASGRPTPDAQQAVSALASAQTDGLVPQDYDADGLK
RALAEAATGPQPAQDAIDKLDNTLSDAMRRYLSDLHSGRVDPRKVHANFTAPPSTAFEPDSYLRAAVAGHRLPEAIREAA
PSFPLYGTLRDALAHYRTLAAQPGWDRTLPALPGGKLTSGQAYSGLAEMARRLQALGDMPADAPAPKRYSGAVVDGVKAF
QARHGLEADGVIGAGTLAQLNTTPAARVRQIELTMERLRWTPLTDSPRMIVVNIPEFMLRAYDYNGGKLDIKLEMKVIVG
KALDTRTPLFKEDMRYIEFSPYWNVPPSIARSETIPRLRRDPAYFTQQGFEFVSNGKAVTTLSDANLDAVLNGRMRIRQR
PGPMNALGDIKFVFPNNQNIYLHHTPTPQLFKRDRRDFSHGCIRVEEPVALAKFVLQDMPGWTEERIRQAMTKGQSNTVA
LQQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLDQALSQKTARRPASVPASAPAAPATPATPDALARPAPTQNPT

Sequences:

>Translated_557_residues
MTPATTPDTRLSATPASHARHWIGGTLAAWLLACAASAAAQPLWFASGRPTPDAQQAVSALASAQTDGLVPQDYDADGLK
RALAEAATGPQPAQDAIDKLDNTLSDAMRRYLSDLHSGRVDPRKVHANFTAPPSTAFEPDSYLRAAVAGHRLPEAIREAA
PSFPLYGTLRDALAHYRTLAAQPGWDRTLPALPGGKLTSGQAYSGLAEMARRLQALGDMPADAPAPKRYSGAVVDGVKAF
QARHGLEADGVIGAGTLAQLNTTPAARVRQIELTMERLRWTPLTDSPRMIVVNIPEFMLRAYDYNGGKLDIKLEMKVIVG
KALDTRTPLFKEDMRYIEFSPYWNVPPSIARSETIPRLRRDPAYFTQQGFEFVSNGKAVTTLSDANLDAVLNGRMRIRQR
PGPMNALGDIKFVFPNNQNIYLHHTPTPQLFKRDRRDFSHGCIRVEEPVALAKFVLQDMPGWTEERIRQAMTKGQSNTVA
LQQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLDQALSQKTARRPASVPASAPAAPATPATPDALARPAPTQNPT
>Mature_556_residues
TPATTPDTRLSATPASHARHWIGGTLAAWLLACAASAAAQPLWFASGRPTPDAQQAVSALASAQTDGLVPQDYDADGLKR
ALAEAATGPQPAQDAIDKLDNTLSDAMRRYLSDLHSGRVDPRKVHANFTAPPSTAFEPDSYLRAAVAGHRLPEAIREAAP
SFPLYGTLRDALAHYRTLAAQPGWDRTLPALPGGKLTSGQAYSGLAEMARRLQALGDMPADAPAPKRYSGAVVDGVKAFQ
ARHGLEADGVIGAGTLAQLNTTPAARVRQIELTMERLRWTPLTDSPRMIVVNIPEFMLRAYDYNGGKLDIKLEMKVIVGK
ALDTRTPLFKEDMRYIEFSPYWNVPPSIARSETIPRLRRDPAYFTQQGFEFVSNGKAVTTLSDANLDAVLNGRMRIRQRP
GPMNALGDIKFVFPNNQNIYLHHTPTPQLFKRDRRDFSHGCIRVEEPVALAKFVLQDMPGWTEERIRQAMTKGQSNTVAL
QQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLDQALSQKTARRPASVPASAPAAPATPATPDALARPAPTQNPT

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=288, Percent_Identity=39.9305555555556, Blast_Score=204, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 60572; Mature: 60441

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPATTPDTRLSATPASHARHWIGGTLAAWLLACAASAAAQPLWFASGRPTPDAQQAVSA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHH
LASAQTDGLVPQDYDADGLKRALAEAATGPQPAQDAIDKLDNTLSDAMRRYLSDLHSGRV
HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPRKVHANFTAPPSTAFEPDSYLRAAVAGHRLPEAIREAAPSFPLYGTLRDALAHYRTLA
CHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AQPGWDRTLPALPGGKLTSGQAYSGLAEMARRLQALGDMPADAPAPKRYSGAVVDGVKAF
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QARHGLEADGVIGAGTLAQLNTTPAARVRQIELTMERLRWTPLTDSPRMIVVNIPEFMLR
HHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHH
AYDYNGGKLDIKLEMKVIVGKALDTRTPLFKEDMRYIEFSPYWNVPPSIARSETIPRLRR
HHCCCCCEEEEEEEEEEEECCHHCCCCCHHHHCCCEEEECCCCCCCCHHHHHHHCHHHHC
DPAYFTQQGFEFVSNGKAVTTLSDANLDAVLNGRMRIRQRPGPMNALGDIKFVFPNNQNI
CCHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCHHEECCCCCCCCCCCEEEEECCCCEE
YLHHTPTPQLFKRDRRDFSHGCIRVEEPVALAKFVLQDMPGWTEERIRQAMTKGQSNTVA
EEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEE
LQQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLDQALSQKTARRPASVPASAPAAPAT
ECCCCCEEEECCHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PATPDALARPAPTQNPT
CCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
TPATTPDTRLSATPASHARHWIGGTLAAWLLACAASAAAQPLWFASGRPTPDAQQAVSA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHH
LASAQTDGLVPQDYDADGLKRALAEAATGPQPAQDAIDKLDNTLSDAMRRYLSDLHSGRV
HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPRKVHANFTAPPSTAFEPDSYLRAAVAGHRLPEAIREAAPSFPLYGTLRDALAHYRTLA
CHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AQPGWDRTLPALPGGKLTSGQAYSGLAEMARRLQALGDMPADAPAPKRYSGAVVDGVKAF
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QARHGLEADGVIGAGTLAQLNTTPAARVRQIELTMERLRWTPLTDSPRMIVVNIPEFMLR
HHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHH
AYDYNGGKLDIKLEMKVIVGKALDTRTPLFKEDMRYIEFSPYWNVPPSIARSETIPRLRR
HHCCCCCEEEEEEEEEEEECCHHCCCCCHHHHCCCEEEECCCCCCCCHHHHHHHCHHHHC
DPAYFTQQGFEFVSNGKAVTTLSDANLDAVLNGRMRIRQRPGPMNALGDIKFVFPNNQNI
CCHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCHHEECCCCCCCCCCCEEEEECCCCEE
YLHHTPTPQLFKRDRRDFSHGCIRVEEPVALAKFVLQDMPGWTEERIRQAMTKGQSNTVA
EEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEE
LQQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLDQALSQKTARRPASVPASAPAAPAT
ECCCCCEEEECCHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PATPDALARPAPTQNPT
CCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]