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The map label for this gene is badR [H]

Identifier: 73537748

GI number: 73537748

Start: 546132

End: 546644

Strand: Reverse

Name: badR [H]

Synonym: Reut_B3914

Alternate gene names: 73537748

Gene position: 546644-546132 (Counterclockwise)

Preceding gene: 73537753

Following gene: 73537747

Centisome position: 20.05

GC content: 63.74

Gene sequence:

>513_bases
ATGGTTAACCCGGAATTTGGCGACGATATCGCCCCAAACGCGCGGATGGAACTGGCAAACCGGCTGTTCTTCCGCCTCTA
TCAATGCGCAAACATGTTGCATAAGACTGGTTCGCGCGCCGTGGAAGCGGAAGGCCTGACCACGCAGCAATGGGCGGTAC
TGGGTGCGCTGTCGCGGCCAGAGGCAGCCAACGGCATGAGCGTGGGAGATCTGGCGCACTACCTGATGGTGAGCCGCCAG
AACCTGTCGGGTCTGGTCAGCCGCATGGAGCGGGACGGCCACGTGAGCCTGGCGCCGGATGCGCGCGACCGTCGTTCGAG
GCTCGTGCGGATGAGCGAAACGGGGCGTGAGGTTTGGCTGCACCAGGCGCAGCCGAAGATCCGCGACTACTACGAGCGCG
CGCTGGAAGGCTTCTCCACGAACGACCTCACGCACACGCTGCACTACCTGCTCAAGCTGCTGGACAATATGCGCGCGCTC
GATACCGGCGCGGCGGACTCCGAAAGCGACTGA

Upstream 100 bases:

>100_bases
GCCATTGCGTCACGCGCCGCCACCGAATTAGGTAAATATATTGACCTATACTAGGCTGAGTAGCGTTGTCACGCAAGGCT
CTTACACAGTGGATCGGATC

Downstream 100 bases:

>100_bases
CCGGCCGTATCACGTTTGCAACGGCGCGCACGATCGGCCGCGCCATCCGCCAGCGCCGCTGACCGGGAAGCCGCCTGAAA
CGGCCAATGGCGCGCAACTT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: Benzoate anaerobic degradation regulator [H]

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MVNPEFGDDIAPNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRPEAANGMSVGDLAHYLMVSRQ
NLSGLVSRMERDGHVSLAPDARDRRSRLVRMSETGREVWLHQAQPKIRDYYERALEGFSTNDLTHTLHYLLKLLDNMRAL
DTGAADSESD

Sequences:

>Translated_170_residues
MVNPEFGDDIAPNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRPEAANGMSVGDLAHYLMVSRQ
NLSGLVSRMERDGHVSLAPDARDRRSRLVRMSETGREVWLHQAQPKIRDYYERALEGFSTNDLTHTLHYLLKLLDNMRAL
DTGAADSESD
>Mature_170_residues
MVNPEFGDDIAPNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRPEAANGMSVGDLAHYLMVSRQ
NLSGLVSRMERDGHVSLAPDARDRRSRLVRMSETGREVWLHQAQPKIRDYYERALEGFSTNDLTHTLHYLLKLLDNMRAL
DTGAADSESD

Specific function: Transcriptional activator of genes for the anaerobic degradation of benzoate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 19148; Mature: 19148

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNPEFGDDIAPNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
EAANGMSVGDLAHYLMVSRQNLSGLVSRMERDGHVSLAPDARDRRSRLVRMSETGREVWL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
HQAQPKIRDYYERALEGFSTNDLTHTLHYLLKLLDNMRALDTGAADSESD
HHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVNPEFGDDIAPNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
EAANGMSVGDLAHYLMVSRQNLSGLVSRMERDGHVSLAPDARDRRSRLVRMSETGREVWL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
HQAQPKIRDYYERALEGFSTNDLTHTLHYLLKLLDNMRALDTGAADSESD
HHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9177244; 10094687 [H]