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The map label for this gene is yfdE [H]

Identifier: 73537711

GI number: 73537711

Start: 497029

End: 498156

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_B3876

Alternate gene names: 73537711

Gene position: 498156-497029 (Counterclockwise)

Preceding gene: 73537712

Following gene: 73537707

Centisome position: 18.27

GC content: 67.38

Gene sequence:

>1128_bases
ATGAGGATCGTTGAACTGGCCGGCATCGGCCCCGGCCCCATGTCTGCCATGCTTCTGGCCGACATGGGGGCCACCGTGCT
GCGTGTGGAGCGCCGTGACGCGGCCGACCTGGGCGTGAAGCGTCCCATCCAGTACAACCTGCTGCTGCGCAATCGAAGGG
CCATCGCGCTCGACCTCAAGGACCCCGCCGCCGTCGAACTGGTGCTGGATCTGGTGGAAAACGCCGACGCGCTGATCGAG
GGCTTTCGTCCCGGCGTGACCGAGCGGCTCGGCCTCGGCCCGGATGTCTGCCTGAAGCGCAATCCGCGTCTCGTCTACGG
CCGCATGACCGGTTGGGGCCAGACCGGACCGCTGGCGAGCGCCGCCGGGCACGACATCAATTACATCTCCCTGACCGGGA
CGCTGAACGCGATTGGTCGCCACGGTCAGCCGCCCAGCGTGCCGCTGGCATTGGTGGGAGACTTCGGAGGCGGCGCCATG
TTCCTGGTCATGGGCCTGCTGGCCGCGATCATCGAGGCGCGCGGCAGCGGCAAGGGACAGGTGGTGGACGCCGCGATCGT
CGACGGTGCGCTGGCACTGAGCACGGCGATCTACGGCATGCATGCAGGAGGCCTGTGGCACCCCGAACGTGGCAGCAACG
TGCTCGACTCCGGGGCGCCGTACTACGACGTCTACGCTTGCAAGGACGGCAAATACATCTCGATCGGTCCGATCGAGGCA
CGCTTCTACTCGGACCTTCTCCAGCGCCTGGATCTCGACGCGGCGGAACTGGGGAACCAGAACGACACCGCCGCCTGGCC
TCGCGCGAAGGAGGCCTTCGCACGCGCGTTTCTCGGGCGGACGCGCGATGAATGGTGCGCCGAACTGGAAGGCACCGATG
TCTGTTTCGCGCCCGTGCTGTCCTTCGACGAAGCGCCGCAGCACCCTCATATGCAGGCACGCGGCAGCTTTGTCGAGGTC
GACGGAGTTACCCAGCCCGCGCCGGCACCGCGATTCAGCCGCACCCAGCCAGCCGTACCCACCGCGCCGCAGGCAGCGTG
CGATGCCACGGTATTCCAGGCACTCTCCGGCTGGATGGACCCGGCTACGGTGGGCAGGTGGCAGGAAAGAGGGGTCTTGG
GCGGTTAA

Upstream 100 bases:

>100_bases
CGCGATCCCGCGGCCGCTGGCGGCAAGGCAATGGTGAATGGCAAGCCGCCAGACCCGAATCGAAAAATTGGAGATACGAA
CCATGGGACCTCTTGCCGGT

Downstream 100 bases:

>100_bases
GGAAACCCGTCATGCCGAGGTCAAGTTGATGGCTGAACGCAGCCACATCGCTTTGGGACCCTGGCCTCTTTGAGCTTCAG
AGCCGGCCTCACCGGCCCCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MRIVELAGIGPGPMSAMLLADMGATVLRVERRDAADLGVKRPIQYNLLLRNRRAIALDLKDPAAVELVLDLVENADALIE
GFRPGVTERLGLGPDVCLKRNPRLVYGRMTGWGQTGPLASAAGHDINYISLTGTLNAIGRHGQPPSVPLALVGDFGGGAM
FLVMGLLAAIIEARGSGKGQVVDAAIVDGALALSTAIYGMHAGGLWHPERGSNVLDSGAPYYDVYACKDGKYISIGPIEA
RFYSDLLQRLDLDAAELGNQNDTAAWPRAKEAFARAFLGRTRDEWCAELEGTDVCFAPVLSFDEAPQHPHMQARGSFVEV
DGVTQPAPAPRFSRTQPAVPTAPQAACDATVFQALSGWMDPATVGRWQERGVLGG

Sequences:

>Translated_375_residues
MRIVELAGIGPGPMSAMLLADMGATVLRVERRDAADLGVKRPIQYNLLLRNRRAIALDLKDPAAVELVLDLVENADALIE
GFRPGVTERLGLGPDVCLKRNPRLVYGRMTGWGQTGPLASAAGHDINYISLTGTLNAIGRHGQPPSVPLALVGDFGGGAM
FLVMGLLAAIIEARGSGKGQVVDAAIVDGALALSTAIYGMHAGGLWHPERGSNVLDSGAPYYDVYACKDGKYISIGPIEA
RFYSDLLQRLDLDAAELGNQNDTAAWPRAKEAFARAFLGRTRDEWCAELEGTDVCFAPVLSFDEAPQHPHMQARGSFVEV
DGVTQPAPAPRFSRTQPAVPTAPQAACDATVFQALSGWMDPATVGRWQERGVLGG
>Mature_375_residues
MRIVELAGIGPGPMSAMLLADMGATVLRVERRDAADLGVKRPIQYNLLLRNRRAIALDLKDPAAVELVLDLVENADALIE
GFRPGVTERLGLGPDVCLKRNPRLVYGRMTGWGQTGPLASAAGHDINYISLTGTLNAIGRHGQPPSVPLALVGDFGGGAM
FLVMGLLAAIIEARGSGKGQVVDAAIVDGALALSTAIYGMHAGGLWHPERGSNVLDSGAPYYDVYACKDGKYISIGPIEA
RFYSDLLQRLDLDAAELGNQNDTAAWPRAKEAFARAFLGRTRDEWCAELEGTDVCFAPVLSFDEAPQHPHMQARGSFVEV
DGVTQPAPAPRFSRTQPAVPTAPQAACDATVFQALSGWMDPATVGRWQERGVLGG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=346, Percent_Identity=41.907514450867, Blast_Score=293, Evalue=1e-79,
Organism=Homo sapiens, GI266456254, Length=346, Percent_Identity=41.907514450867, Blast_Score=293, Evalue=2e-79,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=42.1259842519685, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI266458397, Length=252, Percent_Identity=42.0634920634921, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI300863128, Length=353, Percent_Identity=24.929178470255, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=43.6619718309859, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI42822893, Length=156, Percent_Identity=41.025641025641, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI300863124, Length=379, Percent_Identity=24.0105540897098, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI300863126, Length=353, Percent_Identity=22.9461756373938, Blast_Score=92, Evalue=7e-19,
Organism=Escherichia coli, GI87082093, Length=346, Percent_Identity=28.0346820809249, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788717, Length=204, Percent_Identity=28.921568627451, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786222, Length=344, Percent_Identity=26.1627906976744, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32564160, Length=333, Percent_Identity=30.3303303303303, Blast_Score=182, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI115535051, Length=337, Percent_Identity=30.8605341246291, Blast_Score=177, Evalue=7e-45,
Organism=Drosophila melanogaster, GI24585488, Length=348, Percent_Identity=39.367816091954, Blast_Score=271, Evalue=7e-73,
Organism=Drosophila melanogaster, GI24648431, Length=378, Percent_Identity=28.5714285714286, Blast_Score=112, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39895; Mature: 39895

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVELAGIGPGPMSAMLLADMGATVLRVERRDAADLGVKRPIQYNLLLRNRRAIALDLK
CEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCEEEEEEECCCEEEEECC
DPAAVELVLDLVENADALIEGFRPGVTERLGLGPDVCLKRNPRLVYGRMTGWGQTGPLAS
CCHHHHHHHHHHHCHHHHHHCCCCCCHHHHCCCCCHHCCCCCEEEEEECCCCCCCCCCCH
AAGHDINYISLTGTLNAIGRHGQPPSVPLALVGDFGGGAMFLVMGLLAAIIEARGSGKGQ
HCCCCCEEEEEECCHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
VVDAAIVDGALALSTAIYGMHAGGLWHPERGSNVLDSGAPYYDVYACKDGKYISIGPIEA
EEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCHH
RFYSDLLQRLDLDAAELGNQNDTAAWPRAKEAFARAFLGRTRDEWCAELEGTDVCFAPVL
HHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEHHHHH
SFDEAPQHPHMQARGSFVEVDGVTQPAPAPRFSRTQPAVPTAPQAACDATVFQALSGWMD
CCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
PATVGRWQERGVLGG
CHHHCCHHHCCCCCC
>Mature Secondary Structure
MRIVELAGIGPGPMSAMLLADMGATVLRVERRDAADLGVKRPIQYNLLLRNRRAIALDLK
CEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCEEEEEEECCCEEEEECC
DPAAVELVLDLVENADALIEGFRPGVTERLGLGPDVCLKRNPRLVYGRMTGWGQTGPLAS
CCHHHHHHHHHHHCHHHHHHCCCCCCHHHHCCCCCHHCCCCCEEEEEECCCCCCCCCCCH
AAGHDINYISLTGTLNAIGRHGQPPSVPLALVGDFGGGAMFLVMGLLAAIIEARGSGKGQ
HCCCCCEEEEEECCHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
VVDAAIVDGALALSTAIYGMHAGGLWHPERGSNVLDSGAPYYDVYACKDGKYISIGPIEA
EEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCHH
RFYSDLLQRLDLDAAELGNQNDTAAWPRAKEAFARAFLGRTRDEWCAELEGTDVCFAPVL
HHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEHHHHH
SFDEAPQHPHMQARGSFVEVDGVTQPAPAPRFSRTQPAVPTAPQAACDATVFQALSGWMD
CCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
PATVGRWQERGVLGG
CHHHCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]