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The map label for this gene is yhjC [H]

Identifier: 73537658

GI number: 73537658

Start: 428689

End: 429660

Strand: Reverse

Name: yhjC [H]

Synonym: Reut_B3823

Alternate gene names: 73537658

Gene position: 429660-428689 (Counterclockwise)

Preceding gene: 73537659

Following gene: 73537657

Centisome position: 15.76

GC content: 68.42

Gene sequence:

>972_bases
ATGCCAGATCCCCGAGCGGCCACCGCGGCCTACAGAGAATCCGTTCCCGCGCTGCAGCGCATCGGCGCACATCTTGACGA
TCTGCTGCTCTTCATCCACGTGGTCGATGCCGGCGGATTCAGCGCCGCCGAGCGGCAGACCGGCATCGCCAAGTCGCGGC
TGTCCCGCCGGGTGGCGACACTCGAGCGCGCGCTCGGCGTGCGACTGCTGCATCGGTCGGGGCAAGTCTTCGGCCTCACG
CCGGTTGGCGAGGCGGTGCTCGCGCACGCGCGGGAGGCGGCCACGCACGTCGACAAGATCGGCGCCCTCACGCGCAGCGC
CGTGGCAGAGCCATCGGGGGTGATCCACCTCCATACCTCCATGCTGATCGCTGAGACCACGCTCCCTCCAATCCTGGCCG
AGTTTGCGCGCGCTCACCCGGGCGTGCAGGTGCAGTTGACGCTCTCGAATCGCTTTGTCGACCTGGCTGAGGAGCGACTG
GACCTGGTCATCCGCGCGGCCGTTGTGCCGCTCGCCTCGGAGGACGTGGTCGCCGTACCGGTGGCGACGTCGGCGTCGAT
CGTCGTGGCCCATCCGTCGTTGCTGGAAGCCGACGGCCCGCCAGCGCGCCTCGACGAGTTGGCGGGCTACCCCTGCCTCG
CGCAGGGCACACTGACAAATCCGCGGCCATGGCAGTTCATCGACGCAGACGACAAGCCGATCGATATTGCTGTCACGCCG
GGCATTGCCGTGGATAACCTGCTGGCCATCCGCGAACTCGCACTGCGCGGCGCCGGCATGGCACAGTTGCCGTCTTATCT
ATGCCAGGACGCCATCGATGCCGGCATGCTGGTGCCCGTGCTGCAAGGCGTGCGTTCGCGCCCCGCCACGCTGTACGCGA
TGTACCCGAGCCGGCGCGGCATGACGTCCGCCGTGCGTGTGTTCCTCGACCTGGTACGCACAAGGTGGCCGTCCGATCCG
GCTACCGCCTGA

Upstream 100 bases:

>100_bases
CGAGCGCCGTCAGATTCTCGGCTACGTCCTTCCCAGCCGCCCGTCAGGGCCGTAGCATCTACGTTTCCCGCATTTTCGCG
GCCCCGCGCCTTCGCCTCCT

Downstream 100 bases:

>100_bases
TCCCTAGTGTCCGGCGGGCCCGTTCCAGTTCCGCAACGCCCTGTTGCAAACCACCGGCTTCCCCCCACCCGGGGCGAGCC
GATAACGTTCCCCGCATCGA

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MPDPRAATAAYRESVPALQRIGAHLDDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVATLERALGVRLLHRSGQVFGLT
PVGEAVLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTSMLIAETTLPPILAEFARAHPGVQVQLTLSNRFVDLAEERL
DLVIRAAVVPLASEDVVAVPVATSASIVVAHPSLLEADGPPARLDELAGYPCLAQGTLTNPRPWQFIDADDKPIDIAVTP
GIAVDNLLAIRELALRGAGMAQLPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYPSRRGMTSAVRVFLDLVRTRWPSDP
ATA

Sequences:

>Translated_323_residues
MPDPRAATAAYRESVPALQRIGAHLDDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVATLERALGVRLLHRSGQVFGLT
PVGEAVLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTSMLIAETTLPPILAEFARAHPGVQVQLTLSNRFVDLAEERL
DLVIRAAVVPLASEDVVAVPVATSASIVVAHPSLLEADGPPARLDELAGYPCLAQGTLTNPRPWQFIDADDKPIDIAVTP
GIAVDNLLAIRELALRGAGMAQLPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYPSRRGMTSAVRVFLDLVRTRWPSDP
ATA
>Mature_322_residues
PDPRAATAAYRESVPALQRIGAHLDDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVATLERALGVRLLHRSGQVFGLTP
VGEAVLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTSMLIAETTLPPILAEFARAHPGVQVQLTLSNRFVDLAEERLD
LVIRAAVVPLASEDVVAVPVATSASIVVAHPSLLEADGPPARLDELAGYPCLAQGTLTNPRPWQFIDADDKPIDIAVTPG
IAVDNLLAIRELALRGAGMAQLPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYPSRRGMTSAVRVFLDLVRTRWPSDPA
TA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=282, Percent_Identity=28.3687943262411, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=26.2798634812287, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=27.0627062706271, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=28.0821917808219, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=26.0416666666667, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=25.3424657534247, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789639, Length=300, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1786448, Length=274, Percent_Identity=25.9124087591241, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=302, Percent_Identity=24.1721854304636, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34394; Mature: 34263

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPRAATAAYRESVPALQRIGAHLDDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVAT
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LERALGVRLLHRSGQVFGLTPVGEAVLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTS
HHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
MLIAETTLPPILAEFARAHPGVQVQLTLSNRFVDLAEERLDLVIRAAVVPLASEDVVAVP
HHHHHHCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
VATSASIVVAHPSLLEADGPPARLDELAGYPCLAQGTLTNPRPWQFIDADDKPIDIAVTP
ECCCCEEEEECCHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCEEECCCCCCEEEEECC
GIAVDNLLAIRELALRGAGMAQLPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYPSRRG
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCC
MTSAVRVFLDLVRTRWPSDPATA
HHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PDPRAATAAYRESVPALQRIGAHLDDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVAT
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LERALGVRLLHRSGQVFGLTPVGEAVLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTS
HHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
MLIAETTLPPILAEFARAHPGVQVQLTLSNRFVDLAEERLDLVIRAAVVPLASEDVVAVP
HHHHHHCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
VATSASIVVAHPSLLEADGPPARLDELAGYPCLAQGTLTNPRPWQFIDADDKPIDIAVTP
ECCCCEEEEECCHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCEEECCCCCCEEEEECC
GIAVDNLLAIRELALRGAGMAQLPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYPSRRG
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCC
MTSAVRVFLDLVRTRWPSDPATA
HHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]