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The map label for this gene is yvoA [H]

Identifier: 73537634

GI number: 73537634

Start: 401555

End: 402310

Strand: Reverse

Name: yvoA [H]

Synonym: Reut_B3799

Alternate gene names: 73537634

Gene position: 402310-401555 (Counterclockwise)

Preceding gene: 73537640

Following gene: 73537633

Centisome position: 14.76

GC content: 67.46

Gene sequence:

>756_bases
ATGCAAGACAACGCCCCGCTGCACAGCTCCGCAACCGCCGTCGGCGTGAGCCGCTACGGCCGGATCGCGGCCCAGTTGCA
GCGCAAGATCGTGGACGGCGAATGGCCGCCCGGCGCGGCCATTCCGGCCGAAAGCACGCTTGCCACTGAGTTTGGCACGG
CGCTCGGCACCATCCGCCAGGCGATAGCCGTACTCGTGCAGGAGGGATTACTGGAGCGGGTGCAGGGCAAAGGCACCTTC
GTGCGCAATGGACTCACCGGTGCCAGCATGATGCGGTTCTTCCGCTTTCGGGCCGATGCGGGTGCGGCTGACGTGGCCAT
CCCGCGTTCCGAGATCCTGTCGTGCCGCGCCGTGCGGCTGGAGAAGTCTGTTGCGACGCTGTTCGGGCTGGACACAGGCG
CTCGCGGGCTGGCGATCTCGCGGCGCCGCTGGCTCGACGACAAGCCTCGCCTGCTCGAATCGATCTGGCTGCCGCTGCCG
CGTTGCGAGCCGCTGCAGCGCCTGCCCAAGGCCGAATGGGGCGACCTGCTCTATCCGTTGCTGGCTTCGCAATGCGGCAT
CACGATCCACCGTGCCGTCGACGAAGTGACATTCCGCACGCTCGATGCGGACCAGGCCGAATTGCTCGACCTGCCCGATG
GTCACCCATGCGCGCTCGTGACACGGCGCGCGTATGACCTGCAGGGCAACTGTGCGGAGTACCGGCTGACAGAGGGCGAC
GCCTACGCGTTCCGCTACCAGGCGGACATCCGCTGA

Upstream 100 bases:

>100_bases
TCGTCGCTGCTCCTCGCATGCGGGTAAGCCCTGATATGGCATCAGGCGCCCCCATCTATACTCTAGTCCTCTAGAGGACA
CCAATCTACACGAACCCCAG

Downstream 100 bases:

>100_bases
CCCATGAAAAAGAACACTGATGTGGAGACAAGCTTGAATCCTTCGACAACATGCATCGCAGCCGCCGTGGCCACCAGCCT
GCTGCTCAGCCCCGTCCTTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MQDNAPLHSSATAVGVSRYGRIAAQLQRKIVDGEWPPGAAIPAESTLATEFGTALGTIRQAIAVLVQEGLLERVQGKGTF
VRNGLTGASMMRFFRFRADAGAADVAIPRSEILSCRAVRLEKSVATLFGLDTGARGLAISRRRWLDDKPRLLESIWLPLP
RCEPLQRLPKAEWGDLLYPLLASQCGITIHRAVDEVTFRTLDADQAELLDLPDGHPCALVTRRAYDLQGNCAEYRLTEGD
AYAFRYQADIR

Sequences:

>Translated_251_residues
MQDNAPLHSSATAVGVSRYGRIAAQLQRKIVDGEWPPGAAIPAESTLATEFGTALGTIRQAIAVLVQEGLLERVQGKGTF
VRNGLTGASMMRFFRFRADAGAADVAIPRSEILSCRAVRLEKSVATLFGLDTGARGLAISRRRWLDDKPRLLESIWLPLP
RCEPLQRLPKAEWGDLLYPLLASQCGITIHRAVDEVTFRTLDADQAELLDLPDGHPCALVTRRAYDLQGNCAEYRLTEGD
AYAFRYQADIR
>Mature_251_residues
MQDNAPLHSSATAVGVSRYGRIAAQLQRKIVDGEWPPGAAIPAESTLATEFGTALGTIRQAIAVLVQEGLLERVQGKGTF
VRNGLTGASMMRFFRFRADAGAADVAIPRSEILSCRAVRLEKSVATLFGLDTGARGLAISRRRWLDDKPRLLESIWLPLP
RCEPLQRLPKAEWGDLLYPLLASQCGITIHRAVDEVTFRTLDADQAELLDLPDGHPCALVTRRAYDLQGNCAEYRLTEGD
AYAFRYQADIR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=27.1551724137931, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082252, Length=212, Percent_Identity=24.0566037735849, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27620; Mature: 27620

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDNAPLHSSATAVGVSRYGRIAAQLQRKIVDGEWPPGAAIPAESTLATEFGTALGTIRQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AIAVLVQEGLLERVQGKGTFVRNGLTGASMMRFFRFRADAGAADVAIPRSEILSCRAVRL
HHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
EKSVATLFGLDTGARGLAISRRRWLDDKPRLLESIWLPLPRCEPLQRLPKAEWGDLLYPL
HHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHH
LASQCGITIHRAVDEVTFRTLDADQAELLDLPDGHPCALVTRRAYDLQGNCAEYRLTEGD
HHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEHHHCCCCCCHHEEEECCC
AYAFRYQADIR
EEEEEEEECCC
>Mature Secondary Structure
MQDNAPLHSSATAVGVSRYGRIAAQLQRKIVDGEWPPGAAIPAESTLATEFGTALGTIRQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AIAVLVQEGLLERVQGKGTFVRNGLTGASMMRFFRFRADAGAADVAIPRSEILSCRAVRL
HHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
EKSVATLFGLDTGARGLAISRRRWLDDKPRLLESIWLPLPRCEPLQRLPKAEWGDLLYPL
HHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHH
LASQCGITIHRAVDEVTFRTLDADQAELLDLPDGHPCALVTRRAYDLQGNCAEYRLTEGD
HHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEHHHCCCCCCHHEEEECCC
AYAFRYQADIR
EEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]