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The map label for this gene is ydhC [H]

Identifier: 73537601

GI number: 73537601

Start: 362973

End: 363677

Strand: Direct

Name: ydhC [H]

Synonym: Reut_B3766

Alternate gene names: 73537601

Gene position: 362973-363677 (Clockwise)

Preceding gene: 73537600

Following gene: 73537602

Centisome position: 13.31

GC content: 67.94

Gene sequence:

>705_bases
ATGGCCCTCACTTCGCCCACTGCCTCGACTGCTCCGACTGCCGAGCCGCTTAGTCTCGGCGCCAGCCATTCGCCGCTGTT
CGCCCTTGTCACCGACAAGCTGCGCGAGGGCATCCTGAACGGCAAGTTCGCGCCGGGGGAACGGCTGGTGGAGAACAAGC
TGTCGGCCGAACTCGGGGTGTCGCGTATTCCGGTGCGCGAGGCGCTGCGCGCGCTCGCCAGCGAAGGCCTGGTACTGATC
GAGCCACGCCGTGGCGCCTCGGTGGCGAGCCTGTCGCCGGTGATCGCGCGCGAGATGGTCGAGGTACGCGCCACGCTGGA
AGGCCTCAACGCCAAGCTCGCCGCACAGCGCCGCGACCCGGCGCTGGTCGCCGAACTGGAAACCGTGCTGCGCCAGGGCA
TGGACGCCGCCGCGCAGGGCCGCGCGGATGAACTGCTCTCGCTGAATTCCCGTTTCCACGAGGTGCTGGGTACGATTGCT
GCCAACAGCGTGCTGCAGGAAATGATGCGCTCGCTGCGCGAGCGCACCGCCGTGCTGTTCGGGCCTGCAAACGTGGTCCG
TGCGCGCCAGAACTGGGATGAGCACGCCCAGATCCTGCAGGCGGTGATTGCGGGGGACGCTGATCTGGCTGCCTTGCTGG
CGGCGCGGCATGTTTATAGTGCTGCGAAGGCGGCGGATTTGCCGGTGGAAGGGCAGGTGGCTTGA

Upstream 100 bases:

>100_bases
TTTTACCTTCCAGCGCGATTGATAAGACATTGCGGTATACAGTCGGAGGCTTGGTATACAATGAGGGCCAGTTCGTGTCC
TGCTTCGCTTCCGTTCATCC

Downstream 100 bases:

>100_bases
GGGGCTGAGGTTTTGGTTCTTCGCTAAATTGCGGTTGTCGGGCTTGGCATGCGCCGCTGTTTCGCCGGCGTAGCCGGCGA
GTCACTTTCTGTCCGAGCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MALTSPTASTAPTAEPLSLGASHSPLFALVTDKLREGILNGKFAPGERLVENKLSAELGVSRIPVREALRALASEGLVLI
EPRRGASVASLSPVIAREMVEVRATLEGLNAKLAAQRRDPALVAELETVLRQGMDAAAQGRADELLSLNSRFHEVLGTIA
ANSVLQEMMRSLRERTAVLFGPANVVRARQNWDEHAQILQAVIAGDADLAALLAARHVYSAAKAADLPVEGQVA

Sequences:

>Translated_234_residues
MALTSPTASTAPTAEPLSLGASHSPLFALVTDKLREGILNGKFAPGERLVENKLSAELGVSRIPVREALRALASEGLVLI
EPRRGASVASLSPVIAREMVEVRATLEGLNAKLAAQRRDPALVAELETVLRQGMDAAAQGRADELLSLNSRFHEVLGTIA
ANSVLQEMMRSLRERTAVLFGPANVVRARQNWDEHAQILQAVIAGDADLAALLAARHVYSAAKAADLPVEGQVA
>Mature_233_residues
ALTSPTASTAPTAEPLSLGASHSPLFALVTDKLREGILNGKFAPGERLVENKLSAELGVSRIPVREALRALASEGLVLIE
PRRGASVASLSPVIAREMVEVRATLEGLNAKLAAQRRDPALVAELETVLRQGMDAAAQGRADELLSLNSRFHEVLGTIAA
NSVLQEMMRSLRERTAVLFGPANVVRARQNWDEHAQILQAVIAGDADLAALLAARHVYSAAKAADLPVEGQVA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=140, Percent_Identity=32.8571428571429, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87081914, Length=201, Percent_Identity=25.8706467661692, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24788; Mature: 24657

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50949 HTH_GNTR ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTSPTASTAPTAEPLSLGASHSPLFALVTDKLREGILNGKFAPGERLVENKLSAELGV
CCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
SRIPVREALRALASEGLVLIEPRRGASVASLSPVIAREMVEVRATLEGLNAKLAAQRRDP
CCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ALVAELETVLRQGMDAAAQGRADELLSLNSRFHEVLGTIAANSVLQEMMRSLRERTAVLF
HHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GPANVVRARQNWDEHAQILQAVIAGDADLAALLAARHVYSAAKAADLPVEGQVA
CCHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ALTSPTASTAPTAEPLSLGASHSPLFALVTDKLREGILNGKFAPGERLVENKLSAELGV
CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
SRIPVREALRALASEGLVLIEPRRGASVASLSPVIAREMVEVRATLEGLNAKLAAQRRDP
CCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ALVAELETVLRQGMDAAAQGRADELLSLNSRFHEVLGTIAANSVLQEMMRSLRERTAVLF
HHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GPANVVRARQNWDEHAQILQAVIAGDADLAALLAARHVYSAAKAADLPVEGQVA
CCHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]