Click here to switch to the map view.

The map label for this gene is yrvN [H]

Identifier: 71911512

GI number: 71911512

Start: 1659265

End: 1660533

Strand: Direct

Name: yrvN [H]

Synonym: M5005_Spy_1699

Alternate gene names: 71911512

Gene position: 1659265-1660533 (Clockwise)

Preceding gene: 71911511

Following gene: 71911513

Centisome position: 90.25

GC content: 42.95

Gene sequence:

>1269_bases
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAAATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGTC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
CAACCTCCCCATTCCAAGACATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Upstream 100 bases:

>100_bases
CAGAAAGCATCGGAACTCCTGATGGCATGACCATGATTGCCAACTTCATCGCAGCCATTCCCCGTTAATCTCATCCCCCA
AAAGAAAGGAGGACAGTTAC

Downstream 100 bases:

>100_bases
CTGCTAGTTTTAAAAATCGCAACCGATTTCAAAAATCGATAATTTTGCTTGAAAAAATTTTAAAAAGTGGTATTATAAAA
GTACAGAAACATTGCTGTGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Sequences:

>Translated_422_residues
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD
>Mature_421_residues
PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQ
EIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQL
AISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHYD
VLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVVI
DLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEAN
ETGKYERALGSNKERIDKLSD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=38.302752293578, Blast_Score=261, Evalue=1e-69,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=34.6330275229358, Blast_Score=214, Evalue=1e-55,
Organism=Escherichia coli, GI1787119, Length=401, Percent_Identity=37.4064837905237, Blast_Score=264, Evalue=7e-72,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=35.0467289719626, Blast_Score=223, Evalue=5e-59,
Organism=Saccharomyces cerevisiae, GI6324039, Length=310, Percent_Identity=26.4516129032258, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46616; Mature: 46484

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIA
CCCCEEEEECCHHHHHHHCCCEECCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTI
CCHHHEEEEECCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHEECCCCE
IMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQLAISDKERGFPFLVTIDDEA
EEEEECCCCCCEEECHHHHCCEEEEEECCCCCCHHHHHEEEEECCCCCCCEEEEEECCCC
LDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
EEEEEEECCCHHHHHHCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHEEEEECCCCCHH
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTA
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCEEEEEH
LDAAQRIGFPEARILIANVVIDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHY
HHHHHHCCCCHHHHHHEEEHEEEEECCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCC
AGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEANETGKYERALGSNKERIDKL
CCCCCCCCCHHCCCCCCCHHHHHHHHCCCHHHHCCEEECCCCCCCHHHHHCCCHHHHHHC
SD
CC
>Mature Secondary Structure 
PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIA
CCCEEEEECCHHHHHHHCCCEECCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTI
CCHHHEEEEECCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHEECCCCE
IMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQLAISDKERGFPFLVTIDDEA
EEEEECCCCCCEEECHHHHCCEEEEEECCCCCCHHHHHEEEEECCCCCCCEEEEEECCCC
LDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
EEEEEEECCCHHHHHHCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHEEEEECCCCCHH
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTA
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCEEEEEH
LDAAQRIGFPEARILIANVVIDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHY
HHHHHHCCCCHHHHHHEEEHEEEEECCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCC
AGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEANETGKYERALGSNKERIDKL
CCCCCCCCCHHCCCCCCCHHHHHHHHCCCHHHHCCEEECCCCCCCHHHHHCCCHHHHHHC
SD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]