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The map label for this gene is xtmB [H]

Identifier: 71911253

GI number: 71911253

Start: 1408344

End: 1409621

Strand: Reverse

Name: xtmB [H]

Synonym: M5005_Spy_1440

Alternate gene names: 71911253

Gene position: 1409621-1408344 (Counterclockwise)

Preceding gene: 71911254

Following gene: 71911252

Centisome position: 76.67

GC content: 36.31

Gene sequence:

>1278_bases
ATGACGATTAAACAGCGCCCTAAAATTAATATCGTAATCAAGTATCCTAGCAAAGTTTTTAACAAACATATCTACGACAA
ACTTTACAACTATAGCAACTTCACGGAAGTTCATTATGGTGGGGCGTCTAGCGGAAAGTCTCACGGTGTTTTTCAAAAGA
TAATTTTAAAAGCACTTAACCCTAAATTCAAACATCCCAGAAAGATATTAGTTCTCAGAAAAGTCGGTGCAACCGTTAGA
GACTCTGTATTTGCTGATATCATGTCTAATTTGTCGTATTTCGGCATCTTGGATAAATGTAAGATAAATATGTCGGCTTT
TAGAATAACGCTCCCGAATGGCTCGGAATTCATTTTTAAGGGTATGGATAACCCTGAGAAGATTAAGTCAATTAAGGGGA
TATCTGATGTCGTCATGGAAGAAGCTAGTGAGTTTACGCTTGATGATTATACGCAGTTGACTTTGCGTTTAAGAGATAAG
AAACATCTAGAGAAGCAAATATACTTGATGTTTAACCCTGTGTCAAAAGTAAACTGGGTTTATAAAGCCTTCTTCGTTAA
GACACCTAAGAATACAGTTGTCTATCAAACAACTTATAAAGACAACCGCTTCTTAGATGATGTCACGAGAGAAAATATTG
AGGAACTAGCCGATAGGAATGAAGCTTACTACAAAATATATGCTCTTGGCCAGTTTGCTACACTTGATAAACTAATTTTT
CCCAAATATGACAAGCAAATATTAAACAAAGACAAGTTATCACACTTGTCTTCTTTTTTTGGTTTGGACTATGGGTTTAT
CAATGACCCTTCGGCATTTTTGCATGTTAAAATCGATGACGCAAACAAGAAGTTATACGTCATAGAGGAATATGTCAGAA
AGAATTTGACCAATGACAAAATAGCAAATGCTATAAAGGACCTCGGCTATGCCAAAGAAGAAATCAGAGGAGATTCGGCT
GAAAAGAAATCTAACCAAGAGCTGAGGAATTTAGGTATTCCTAGAATGATTGATGTTACAAAAGGGCCTGGAACCGTTAT
GCAAGGAATTCAGTACCTGCTTCAGTATGATTGGGTTGTTGATGAAAGGTGTGTCAAGACTATTGAAGAACTCGAAAATT
ACACTTGGAAGAAAGACAAGAAAACTAATGAGTATATCAACGAACCAGTTGACAGTTATAACCACTGCATTGACGCCATA
AGATATGCCGTACAAGACAGAATATACCAGTCGGCGGATAGAAGTAAGCGCATGAAAAATGCTAAATATTATTTTTAG

Upstream 100 bases:

>100_bases
ATCAAGGCAGCTGAGCTACTAGGTAAGCGGTACAGATTATTCACTGACAAGGTTGAAATGGATGTCAGCTCAGATGTAAC
CATTAACGTAGGTGAGTGGG

Downstream 100 bases:

>100_bases
GAATGAGGTGAGACTTTGGAAGAAAAACAATTTTTAGCAGGAACTCGTTTTAATGAGAATGCTAATAAGCAATTTATTAT
GCTGCAAGAAGACTTTGAAG

Product: terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MTIKQRPKINIVIKYPSKVFNKHIYDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALNPKFKHPRKILVLRKVGATVR
DSVFADIMSNLSYFGILDKCKINMSAFRITLPNGSEFIFKGMDNPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDK
KHLEKQIYLMFNPVSKVNWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDKLIF
PKYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVIEEYVRKNLTNDKIANAIKDLGYAKEEIRGDSA
EKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWVVDERCVKTIEELENYTWKKDKKTNEYINEPVDSYNHCIDAI
RYAVQDRIYQSADRSKRMKNAKYYF

Sequences:

>Translated_425_residues
MTIKQRPKINIVIKYPSKVFNKHIYDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALNPKFKHPRKILVLRKVGATVR
DSVFADIMSNLSYFGILDKCKINMSAFRITLPNGSEFIFKGMDNPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDK
KHLEKQIYLMFNPVSKVNWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDKLIF
PKYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVIEEYVRKNLTNDKIANAIKDLGYAKEEIRGDSA
EKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWVVDERCVKTIEELENYTWKKDKKTNEYINEPVDSYNHCIDAI
RYAVQDRIYQSADRSKRMKNAKYYF
>Mature_424_residues
TIKQRPKINIVIKYPSKVFNKHIYDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALNPKFKHPRKILVLRKVGATVRD
SVFADIMSNLSYFGILDKCKINMSAFRITLPNGSEFIFKGMDNPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKK
HLEKQIYLMFNPVSKVNWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDKLIFP
KYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVIEEYVRKNLTNDKIANAIKDLGYAKEEIRGDSAE
KKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWVVDERCVKTIEELENYTWKKDKKTNEYINEPVDSYNHCIDAIR
YAVQDRIYQSADRSKRMKNAKYYF

Specific function: Functions as a terminase [H]

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaT and phage SPP1 terminase large subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006701
- InterPro:   IPR006437 [H]

Pfam domain/function: PF04466 Terminase_3 [H]

EC number: NA

Molecular weight: Translated: 49691; Mature: 49559

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKQRPKINIVIKYPSKVFNKHIYDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALN
CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC
PKFKHPRKILVLRKVGATVRDSVFADIMSNLSYFGILDKCKINMSAFRITLPNGSEFIFK
CCCCCCHHEEEEHHHCCHHHHHHHHHHHHCCHHHCCHHHHEEEEEEEEEECCCCCEEEEE
GMDNPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKVNWV
CCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHH
YKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDKLIF
HHHEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHC
PKYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVIEEYVRKNLTNDK
CCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHHHCCCCHHH
IANAIKDLGYAKEEIRGDSAEKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWVV
HHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCHH
DERCVKTIEELENYTWKKDKKTNEYINEPVDSYNHCIDAIRYAVQDRIYQSADRSKRMKN
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AKYYF
CCCCC
>Mature Secondary Structure 
TIKQRPKINIVIKYPSKVFNKHIYDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALN
CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC
PKFKHPRKILVLRKVGATVRDSVFADIMSNLSYFGILDKCKINMSAFRITLPNGSEFIFK
CCCCCCHHEEEEHHHCCHHHHHHHHHHHHCCHHHCCHHHHEEEEEEEEEECCCCCEEEEE
GMDNPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKVNWV
CCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHH
YKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDKLIF
HHHEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHC
PKYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVIEEYVRKNLTNDK
CCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHHHCCCCHHH
IANAIKDLGYAKEEIRGDSAEKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWVV
HHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCHH
DERCVKTIEELENYTWKKDKKTNEYINEPVDSYNHCIDAIRYAVQDRIYQSADRSKRMKN
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AKYYF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174 [H]