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The map label for this gene is rbgA [H]

Identifier: 71910695

GI number: 71910695

Start: 872482

End: 873330

Strand: Direct

Name: rbgA [H]

Synonym: M5005_Spy_0882

Alternate gene names: 71910695

Gene position: 872482-873330 (Clockwise)

Preceding gene: 71910691

Following gene: 71910696

Centisome position: 47.45

GC content: 38.52

Gene sequence:

>849_bases
ATGGCAATGATTCAATGGTTTCCTGGGCACATGTCCAAAGCCAGAAGACAGGTTCAGGAAAATGTAAAGCATGTTGACTT
TGTAACTATTTTAGTGGATGCACGCTTACCACTTTCTAGTCAAAATCCCATGCTTACAAAAATTGTTGGTGATAAACCTA
AATTAATGATTTTAAATAAAGCTGACTTGGCCGATGCCACTCGTACGAAAGAGTGGAAGGCTTATTATGAAAGTCAAGGT
ATTAAAACATTAGCCATCAATTCCAAAGAACAATCAACGGTTAAAAAAGTAACAGAAGCAGCCAAGGAACTCATGGCTGA
TAAAATTCAACGCTTGCGAGAGCGCGGCATTCAAAAAGAAACCTTGCGAACCATGATTATTGGCATTCCAAATGCTGGTA
AATCTACCTTGATGAATCGCTTGGCTGGTAAGAAAATTGCTGTAGTTGGCAATAAACCTGGTGTGACTAAAGGACAACAA
TGGTTGAAGTCCAATAAGGAATTGGAAATTCTAGACACTCCTGGTATTTTATGGCCAAAATTTGAGGACGAATTGGTGGG
CTTAAAATTAGCTTTAACAGGTGCTATCAAGGACCAATTACTACCAATGGATGAAGTGACTATCTTTGGCTTGAATTACT
TTAGGGAATACTACCCTAATCGTTTAACCAAACGTTTTAAGAATATTCCTCTTGAGGAAGAAGCTCCTGAAATCATTATG
ACCTTGACACGCCAACTTGGATTTAAAGACGATTATGACCGTTTTTACACTTTATTCGTTAAGGAAGTTCGTGATGGTAA
ATTAGGTCAATACACCTTAGATCAGGTGGGAGATATGGATGCCGACTAG

Upstream 100 bases:

>100_bases
ATGCTATAATGTTAAAGAATTGATTGGGATAGATGCCTTCTGTCGCAATCAGACTATTTTATCACGAAGAAGATGATGCT
ACGAAAGGAATGATACACTC

Downstream 100 bases:

>100_bases
TATTAAAGCTATTAAAGAAAGCTTAGAGGCCGTTACTAGCCTCTTGGACCCCCTCTTTCAAGAATTGGCAACCGACACTA
GGTCAGGCGTCCAAAAAGCT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MAMIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQG
IKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQ
WLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIM
TLTRQLGFKDDYDRFYTLFVKEVRDGKLGQYTLDQVGDMDAD

Sequences:

>Translated_282_residues
MAMIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQG
IKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQ
WLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIM
TLTRQLGFKDDYDRFYTLFVKEVRDGKLGQYTLDQVGDMDAD
>Mature_281_residues
AMIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADATRTKEWKAYYESQGI
KTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQW
LKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIMT
LTRQLGFKDDYDRFYTLFVKEVRDGKLGQYTLDQVGDMDAD

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=227, Percent_Identity=35.2422907488987, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI296317324, Length=178, Percent_Identity=28.6516853932584, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI9506611, Length=178, Percent_Identity=28.6516853932584, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7019419, Length=166, Percent_Identity=31.3253012048193, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193211047, Length=316, Percent_Identity=25.3164556962025, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17534827, Length=203, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25143545, Length=285, Percent_Identity=25.2631578947368, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=187, Percent_Identity=27.807486631016, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115535155, Length=187, Percent_Identity=27.807486631016, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323744, Length=221, Percent_Identity=27.6018099547511, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321339, Length=208, Percent_Identity=26.9230769230769, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85815858, Length=233, Percent_Identity=33.0472103004292, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI28572990, Length=198, Percent_Identity=29.7979797979798, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32206; Mature: 32075

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNK
CCEEECCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC
ADLADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKE
CCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPK
HHHHHEEECCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCC
FEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIM
CCHHHHHHHEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHH
TLTRQLGFKDDYDRFYTLFVKEVRDGKLGQYTLDQVGDMDAD
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
AMIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNK
CEEECCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC
ADLADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKE
CCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPK
HHHHHEEECCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCC
FEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIM
CCHHHHHHHEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHH
TLTRQLGFKDDYDRFYTLFVKEVRDGKLGQYTLDQVGDMDAD
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]