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The map label for this gene is ydcI [H]

Identifier: 71910293

GI number: 71910293

Start: 470412

End: 472544

Strand: Direct

Name: ydcI [H]

Synonym: M5005_Spy_0480

Alternate gene names: 71910293

Gene position: 470412-472544 (Clockwise)

Preceding gene: 71910292

Following gene: 71910295

Centisome position: 25.59

GC content: 43.32

Gene sequence:

>2133_bases
ATGGAAAATAACAATAATCACAACATTGCAGAGGCTTTGTCAGTTAGTCTCCATCAAATTGAACAGGTGCTTGCCCTAAC
AGCACAAGGCAATACCATTCCCTTTATTGCACGTTACCGTAAAGAAGTAACAGGAAATCTAGATGAAGTGGTGATTAAGT
CCATTATTGATATGGATAAGTCTCTCACTACCCTGAATGAGCGCAAAGCAACCATTCTCGCTAAAATTGAGGAACAGGGA
AAACTGACAGATCAGTTACGAACGAGTATTGAAGCAACCGAGAAACTCGCTGATTTGGAAGAGTTGTACCTGCCTTATAA
GGAAAAACGCCGTACAAAAGCGACGATTGCGCGTGAAGCAGGCTTGTTCCCATTAGCACGTTTGATTTTACAAAATGCGC
AAAACCTTGAAACAGCAGCAGAACCCTTTGTCACAGAAGGATTTGCCAGCCCACAAGAAGCTCTAGCAGGAGCTGTGGAC
ATCCTTGTGGAGGCCATGTCAGAAGATGCTAAATTACGCTCTTGGACCTACAATGAGATTTGGCAGTACAGCCGCTTAGT
ATCAACGCTTAAAGATGAGCAGTTGGATGAGAAAAAGGTTTTCCAAATCTATTACGATTTTTCTGACCAAGTGTCTAACA
TGCAAGGATATCGTACTTTAGCCCTTAACCGTGGCGAAAAGTTAGGCATCTTAAAAGTGTCTTTTGAGCATAACTTGGAG
AAAATGCAACGCTTTTTCAGTGTGCGGTTCAAAGAAACCAACCCTTATATTGAAGAGGTCATCAATCAGACCATCAAAAA
GAAAATTGTTCCAGCTATGGAAAGACGGGTTCGTTCAGAACTCAGTGATGCCGCAGAAGATGGGGCTATCCACCTCTTTT
CTGAAAATCTCCGTCATCTTTTGTTAGTGTCTCCTTTAAAAGGGAAAATGGTTCTTGGGTTTGACCCTGCCTTTCGAACA
GGTGCAAAATTGGCTATCGTTGATCAGACTGGAAAATTGTTGACTACTCAGGTTATTTATCCCGTAGCACCAGCTAGCCA
AACGAAGATTCAAGCAGCTAAAGAAACACTGACTCAGCTCATTGAGACTTACCAGATTGATATTATTGCCATTGGAAACG
GAACAGCCAGTCGGGAAAGTGAAGCCTTTGTAGCAGACGTTTTGAAAGATTTCCCAAATACGTCCTATGTCATCGTTAAC
GAAAGCGGTGCTTCTGTTTATTCAGCGTCAGAGTTAGCCCGCCATGAGTTTCCAGACCTCACAGTGGAGAAGCGCTCTGC
TATTTCTATTGCTCGTCGCTTGCAAGACCCACTCGCAGAATTGGTTAAAATTGATCCTAAATCTATTGGCGTCGGTCAGT
ACCAGCACGATGTGAGTCAGAAAAAGTTGAGTGAGAATCTTGGTTTTGTTGTGGATACTGTGGTTAACCAAGTCGGTGTT
AATGTGAACACGGCTAGTCCATCTTTATTAGCACATGTGTCAGGTTTGAACAAAACGATTTCAGAAAATATTGTCAAATA
CCGCGAAGAAAATGGAGCACTGACATCACGCGCTGACATCAAAAAAGTGCCGCGTTTAGGAGCCAAGGCGTTTGAGCAAG
CAGCAGGTTTTCTCAGAATTCCAGGAGCCAAAAATATTTTAGACAACACAGGAGTTCACCCCGAGTCCTACCCAGCAGTC
AAAGAACTCTTTAAGGTACTTGGTATTCAGGACTTGGACGACGCTGCCAAGGCAACTTTAGCAGCAGTTCAAGTTCCCCA
AATGGCAGAAACATTGGCTATTGGGCAGGAAACCCTTAAAGATATCATTGCTGATCTCCTTAAACCGGGTCGTGACCTTC
GTGATGACTTTGAAGCACCAATCTTACGTCAAGATATCCTTGATTTGAAAGATTTGGAAATTGGCCAGAAGCTTGAAGGA
ACTGTGAGAAACGTCGTTGACTTTGGTGCTTTTGTAGACATTGGTGTTCATGAAGATGGGCTTATTCACATTTCTGAAAT
GAGCAAAACCTTTGTCAACCACCCTAGTCAAGTTGTTTCAGTGGGTGACTTGGTAACTGTTTGGGTCTCTAAGATTGACT
TGGACCGCCACAAGGTCAATCTCAGCCTATTGCCACCGCGTGACACTCACTAA

Upstream 100 bases:

>100_bases
TAAAAGTAGCTTTTTTTGATTCTTTACGCAACTTTATATTAGGACAATGTTTCGCTATCATTTTTTGCATTAACATGGTT
TGTGTTATAATAGCAATATT

Downstream 100 bases:

>100_bases
TTATGTCCAAGAAGTTTCCCTGGCTGATTTTGGCAAATCACTTCACCACAAGGCTTATTGGAACAAGCGCCTAAAAACAA
CTGGCGGTCGCTTTTTTCCA

Product: transcription accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 710; Mature: 710

Protein sequence:

>710_residues
MENNNNHNIAEALSVSLHQIEQVLALTAQGNTIPFIARYRKEVTGNLDEVVIKSIIDMDKSLTTLNERKATILAKIEEQG
KLTDQLRTSIEATEKLADLEELYLPYKEKRRTKATIAREAGLFPLARLILQNAQNLETAAEPFVTEGFASPQEALAGAVD
ILVEAMSEDAKLRSWTYNEIWQYSRLVSTLKDEQLDEKKVFQIYYDFSDQVSNMQGYRTLALNRGEKLGILKVSFEHNLE
KMQRFFSVRFKETNPYIEEVINQTIKKKIVPAMERRVRSELSDAAEDGAIHLFSENLRHLLLVSPLKGKMVLGFDPAFRT
GAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIETYQIDIIAIGNGTASRESEAFVADVLKDFPNTSYVIVN
ESGASVYSASELARHEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSENLGFVVDTVVNQVGV
NVNTASPSLLAHVSGLNKTISENIVKYREENGALTSRADIKKVPRLGAKAFEQAAGFLRIPGAKNILDNTGVHPESYPAV
KELFKVLGIQDLDDAAKATLAAVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLKDLEIGQKLEG
TVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDLDRHKVNLSLLPPRDTH

Sequences:

>Translated_710_residues
MENNNNHNIAEALSVSLHQIEQVLALTAQGNTIPFIARYRKEVTGNLDEVVIKSIIDMDKSLTTLNERKATILAKIEEQG
KLTDQLRTSIEATEKLADLEELYLPYKEKRRTKATIAREAGLFPLARLILQNAQNLETAAEPFVTEGFASPQEALAGAVD
ILVEAMSEDAKLRSWTYNEIWQYSRLVSTLKDEQLDEKKVFQIYYDFSDQVSNMQGYRTLALNRGEKLGILKVSFEHNLE
KMQRFFSVRFKETNPYIEEVINQTIKKKIVPAMERRVRSELSDAAEDGAIHLFSENLRHLLLVSPLKGKMVLGFDPAFRT
GAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIETYQIDIIAIGNGTASRESEAFVADVLKDFPNTSYVIVN
ESGASVYSASELARHEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSENLGFVVDTVVNQVGV
NVNTASPSLLAHVSGLNKTISENIVKYREENGALTSRADIKKVPRLGAKAFEQAAGFLRIPGAKNILDNTGVHPESYPAV
KELFKVLGIQDLDDAAKATLAAVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLKDLEIGQKLEG
TVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDLDRHKVNLSLLPPRDTH
>Mature_710_residues
MENNNNHNIAEALSVSLHQIEQVLALTAQGNTIPFIARYRKEVTGNLDEVVIKSIIDMDKSLTTLNERKATILAKIEEQG
KLTDQLRTSIEATEKLADLEELYLPYKEKRRTKATIAREAGLFPLARLILQNAQNLETAAEPFVTEGFASPQEALAGAVD
ILVEAMSEDAKLRSWTYNEIWQYSRLVSTLKDEQLDEKKVFQIYYDFSDQVSNMQGYRTLALNRGEKLGILKVSFEHNLE
KMQRFFSVRFKETNPYIEEVINQTIKKKIVPAMERRVRSELSDAAEDGAIHLFSENLRHLLLVSPLKGKMVLGFDPAFRT
GAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIETYQIDIIAIGNGTASRESEAFVADVLKDFPNTSYVIVN
ESGASVYSASELARHEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSENLGFVVDTVVNQVGV
NVNTASPSLLAHVSGLNKTISENIVKYREENGALTSRADIKKVPRLGAKAFEQAAGFLRIPGAKNILDNTGVHPESYPAV
KELFKVLGIQDLDDAAKATLAAVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLKDLEIGQKLEG
TVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDLDRHKVNLSLLPPRDTH

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=766, Percent_Identity=33.6814621409922, Blast_Score=374, Evalue=1e-103,
Organism=Homo sapiens, GI27597090, Length=263, Percent_Identity=28.1368821292776, Blast_Score=77, Evalue=6e-14,
Organism=Escherichia coli, GI87082262, Length=716, Percent_Identity=44.1340782122905, Blast_Score=546, Evalue=1e-156,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=48, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=743, Percent_Identity=32.1668909825034, Blast_Score=262, Evalue=4e-70,
Organism=Caenorhabditis elegans, GI17552892, Length=348, Percent_Identity=27.2988505747126, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI62484314, Length=768, Percent_Identity=33.8541666666667, Blast_Score=382, Evalue=1e-106,
Organism=Drosophila melanogaster, GI24640080, Length=374, Percent_Identity=22.7272727272727, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 78851; Mature: 78851

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS50126 S1 ; PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNNNHNIAEALSVSLHQIEQVLALTAQGNTIPFIARYRKEVTGNLDEVVIKSIIDMDK
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
SLTTLNERKATILAKIEEQGKLTDQLRTSIEATEKLADLEELYLPYKEKRRTKATIAREA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GLFPLARLILQNAQNLETAAEPFVTEGFASPQEALAGAVDILVEAMSEDAKLRSWTYNEI
CHHHHHHHHHHCCHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHH
WQYSRLVSTLKDEQLDEKKVFQIYYDFSDQVSNMQGYRTLALNRGEKLGILKVSFEHNLE
HHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHCCCCCEEEEECCCCEEEEEEEEHHHHHH
KMQRFFSVRFKETNPYIEEVINQTIKKKIVPAMERRVRSELSDAAEDGAIHLFSENLRHL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCE
LLVSPLKGKMVLGFDPAFRTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQL
EEECCCCCCEEEECCHHHHCCCEEEEEECCCCEEEHHEEEECCCCCHHHHHHHHHHHHHH
IETYQIDIIAIGNGTASRESEAFVADVLKDFPNTSYVIVNESGASVYSASELARHEFPDL
HHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCC
TVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSENLGFVVDTVVNQVGV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
NVNTASPSLLAHVSGLNKTISENIVKYREENGALTSRADIKKVPRLGAKAFEQAAGFLRI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCCEEEC
PGAKNILDNTGVHPESYPAVKELFKVLGIQDLDDAAKATLAAVQVPQMAETLAIGQETLK
CCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIIADLLKPGRDLRDDFEAPILRQDILDLKDLEIGQKLEGTVRNVVDFGAFVDIGVHEDG
HHHHHHHCCCCCHHHHHCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHCCEEEECCCCCC
LIHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDLDRHKVNLSLLPPRDTH
CEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCC
>Mature Secondary Structure
MENNNNHNIAEALSVSLHQIEQVLALTAQGNTIPFIARYRKEVTGNLDEVVIKSIIDMDK
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
SLTTLNERKATILAKIEEQGKLTDQLRTSIEATEKLADLEELYLPYKEKRRTKATIAREA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GLFPLARLILQNAQNLETAAEPFVTEGFASPQEALAGAVDILVEAMSEDAKLRSWTYNEI
CHHHHHHHHHHCCHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHH
WQYSRLVSTLKDEQLDEKKVFQIYYDFSDQVSNMQGYRTLALNRGEKLGILKVSFEHNLE
HHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHCCCCCEEEEECCCCEEEEEEEEHHHHHH
KMQRFFSVRFKETNPYIEEVINQTIKKKIVPAMERRVRSELSDAAEDGAIHLFSENLRHL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCE
LLVSPLKGKMVLGFDPAFRTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQL
EEECCCCCCEEEECCHHHHCCCEEEEEECCCCEEEHHEEEECCCCCHHHHHHHHHHHHHH
IETYQIDIIAIGNGTASRESEAFVADVLKDFPNTSYVIVNESGASVYSASELARHEFPDL
HHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCC
TVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSENLGFVVDTVVNQVGV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
NVNTASPSLLAHVSGLNKTISENIVKYREENGALTSRADIKKVPRLGAKAFEQAAGFLRI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCCEEEC
PGAKNILDNTGVHPESYPAVKELFKVLGIQDLDDAAKATLAAVQVPQMAETLAIGQETLK
CCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIIADLLKPGRDLRDDFEAPILRQDILDLKDLEIGQKLEGTVRNVVDFGAFVDIGVHEDG
HHHHHHHCCCCCHHHHHCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHCCEEEECCCCCC
LIHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDLDRHKVNLSLLPPRDTH
CEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]