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The map label for this gene is 71893448

Identifier: 71893448

GI number: 71893448

Start: 114282

End: 116720

Strand: Reverse

Name: 71893448

Synonym: MHJ_0089

Alternate gene names: NA

Gene position: 116720-114282 (Counterclockwise)

Preceding gene: 71893449

Following gene: 71893447

Centisome position: 13.01

GC content: 29.85

Gene sequence:

>2439_bases
GTGAATCCAACACGTTTTTTCGGCCTTGGTGGTATGCAGGAAATCGGTAAGTCAACTTTAGTTATCGAGGATGATTATGA
TATTGTAATTATTGATGCTGGAATCAAATTTGCCAACCTTTTTCATACCGGCATTAGAGGAATGGTGCCAAATTATCAGT
ATCTGCAAGAAAAACAAGCTAAAATACGTGGTCTTTTTGTAACTCATGGTCATGAAGATCATATTGGCGGAATAATTTTT
TTAGTTCAAGAAGTGGATATTAAAAAGATTTTTGCCCCAAAAATCGCTATTCAATATTTAAAAGCAAAATTTGAGGACCA
AAAAATTAGGCCAAAGATTGAATTTATCGAAATCAACAAGAACGATACTCATCGTTTTGAAAGTTTTACAGTCGATTTCT
GAACCGCCCAGCATTCTATCCCGGATGCTTTTGGAATTAGAATAACCTCTAGACATGGTTCGATTATGTGCACAGGCGAC
TTTCGTTTTGATTATACCCCAATTGGAAATTATACCGATTTTGAAAGACTAAAAGAAATTGGGAACCAAAAATTAACAGT
GCTTTTTTCTGATTCAACAAATGCAATGAGGCCAAACCATTCACCTTCTGAACGGGATATTCTGGGTGATATTGAAATGC
ATATGCGATCTGCTACAAGAAAAATTATCATCACCGCTTTTGCTTCAAATTTAACAAGAATTAAAGCACTAATTGAAATT
GGGATAAAATTAGAAAAAAAAATCCTTGTTTTCGGGCGCTCGATGGTAAACGGAATTAATATTGGTCGTCGTTCAGGATA
TATAAATGTTGATGATAATGTTTTTCTTGGTAAAAATTTAGAAGGTGTTGAGGAAAATCAGATGTTAATTTTAACAACAG
GATCCCAGGGCGAACAACTTGCAGCTTTGGATCGAATGTCAAACAGAAAACATCCAAAAATCAGCATCGAACCTCGGGAT
CTAATTATTTTTTCCTCTTCGCCAATTCCTGGAAATAAAATTAAAATTGAACATTTGATCAATAGATTATATAAATTAAG
CGCAATTATTAAGGAAAATGGACCTGATGGTTATCTTCATACCTCCGGTCATGCTTATAAAGCCGAACATGAAAAAATTT
TTCAACTAACAAAACCAAAGTACTTTTTCCCTTATCATGGTGAATATCGAATGTGCCTTGCCCACTCGCGGACCGCAATT
GAATCCGGAGTTGATCCAAAAAATGTAATTATCCCTGAAAACGGTCAAGTTTTTAAAATGTACAATCAAGAAATTTATAA
AACAAATGAAAAAATTCCTTGTGATCCGGTTTATATTGACGGTGAGACTATCTCTCGGGATAACTCCCGGATTATTAATG
AGCGACAAGAAATGCGGGAAAATGGTTTTGTTTTTGTCTTAGTTCCATTTGATAGACAAAAAAATTCAATAAATGGGCGA
ATTTCGGTTATTACAAAAGGAGCTTTTTCAACTAAAAATGGAACACAAATTATTGCTGAAATTCGCCGACTTTGTTTTGC
ATCAATTAAGTTTTTTATTGAAAAACAGCCAAAATGATCACCACCGCAAATTAAACAATTAATAAAAAATCGGCTAAATT
CGTATTTCCATAGAACAAAACGTTGAAAACCAGTAATTTTAACACAAATTCTTTATGTTGATCAAAAAGAAGATTTTCTA
AAAAATTACCAGGAAAAAACCACGGAAAAATTTGTGGTTAAGAAAATTAAAACTAATCTTACCAAAGAAAGTGAAAAAAA
TAAAGAAATTCCAACTAAAAAAGGCAAAAAAATGGAAAACCATCCAAAAACTGAACAAAATTATAATAAAATAGCTAAAA
AATCAGATTTAAATAAAAAAGTACAAAATTTACAAATTAGGCAAAAAAATGTGAATGTCAAATCTTCTAAGGCAGAAAAA
GATCAAGAAAATAAAATAAATGAATCAATTAAAAAAGTGACTAGAAAAATAAATTCCACTTTAAGAAAAACAAAAAATGA
TAATCAAAGTGATATTCTAATAGAAAAATCACCAAATTCTAATCAGAAAAACCCAAATAAATTTAAAAATAAAAATCCTC
AAGAAACCGAAAACTTAGTATTCTTTAAAAAAGAAAATTTAAAAAAAAGCTATGAAAATGATGCTAAAAAAAAGATAAAA
AAAAGTCTTATAAACTCAAAAAATTTACCTTATAATAATAAAGAAAATGTTAAAAATTCAAGAGATCCACAAGCCTTATT
AGCCAGAAAAAAACTTTATCCTTTAAAAAATAAGAAGCAAAATACCCTTTTTCAAACGAAAAAACAAGAACTGAATATAC
CAAAAAGCCCAAAAAAATTTAAAAAATCTAATTTTATTACTGCTATAAATACTAAAATTAATAAAGAAAATAATAAAAAG
ACCTCACAAAAAAGTAATAAAATACCGAAAAATGCTTAA

Upstream 100 bases:

>100_bases
AAATGATAGTTATTATTGCTGATGTTTATTTATAAATTTATAAATTATTATAAAAAAATTAAAAAAAGATAATATTGTTA
GGAAAATTATGTCCTTAATG

Downstream 100 bases:

>100_bases
AAATAAAGACACTCACAATTTTATCTACATTAAAGGCGCACGCGAAAACAATTTAAAAAATATTAATCTTGTTCTTCCAA
AAAATAAACTAATAGTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 812; Mature: 812

Protein sequence:

>812_residues
MNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQAKIRGLFVTHGHEDHIGGIIF
LVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINKNDTHRFESFTVDFWTAQHSIPDAFGIRITSRHGSIMCTGD
FRFDYTPIGNYTDFERLKEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKALIEI
GIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLAALDRMSNRKHPKISIEPRD
LIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSRTAI
ESGVDPKNVIIPENGQVFKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSINGR
ISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPKWSPPQIKQLIKNRLNSYFHRTKRWKPVILTQILYVDQKEDFL
KNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSKAEK
DQENKINESIKKVTRKINSTLRKTKNDNQSDILIEKSPNSNQKNPNKFKNKNPQETENLVFFKKENLKKSYENDAKKKIK
KSLINSKNLPYNNKENVKNSRDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKSNFITAINTKINKENNKK
TSQKSNKIPKNA

Sequences:

>Translated_812_residues
MNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQAKIRGLFVTHGHEDHIGGIIF
LVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINKNDTHRFESFTVDF*TAQHSIPDAFGIRITSRHGSIMCTGD
FRFDYTPIGNYTDFERLKEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKALIEI
GIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLAALDRMSNRKHPKISIEPRD
LIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSRTAI
ESGVDPKNVIIPENGQVFKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSINGR
ISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPK*SPPQIKQLIKNRLNSYFHRTKR*KPVILTQILYVDQKEDFL
KNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSKAEK
DQENKINESIKKVTRKINSTLRKTKNDNQSDILIEKSPNSNQKNPNKFKNKNPQETENLVFFKKENLKKSYENDAKKKIK
KSLINSKNLPYNNKENVKNSRDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKSNFITAINTKINKENNKK
TSQKSNKIPKNA
>Mature_812_residues
MNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQAKIRGLFVTHGHEDHIGGIIF
LVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINKNDTHRFESFTVDF*TAQHSIPDAFGIRITSRHGSIMCTGD
FRFDYTPIGNYTDFERLKEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKALIEI
GIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLAALDRMSNRKHPKISIEPRD
LIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSRTAI
ESGVDPKNVIIPENGQVFKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSINGR
ISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPK*SPPQIKQLIKNRLNSYFHRTKR*KPVILTQILYVDQKEDFL
KNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSKAEK
DQENKINESIKKVTRKINSTLRKTKNDNQSDILIEKSPNSNQKNPNKFKNKNPQETENLVFFKKENLKKSYENDAKKKIK
KSLINSKNLPYNNKENVKNSRDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKSNFITAINTKINKENNKK
TSQKSNKIPKNA

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 93362; Mature: 93362

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQA
CCCCEEECCCCHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHH
KIRGLFVTHGHEDHIGGIIFLVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINK
HHEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
NDTHRFESFTVDFTAQHSIPDAFGIRITSRHGSIMCTGDFRFDYTPIGNYTDFERLKEIG
CCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCEEEEECCCCCCHHHHHHHHC
NQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKALIEIG
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHC
IKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLA
CHHEEEHEEHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCCEEEEEECCCCCHHH
ALDRMSNRKHPKISIEPRDLIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHT
HHHHHCCCCCCEEEECCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEC
SGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSRTAIESGVDPKNVIIPENGQVFKMY
CCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEHHCHHHHHCCCCCCEEEECCCCCEEEEE
NQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSINGRI
CHHHHHCCCCCCCCCEEECCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEE
SVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPKSPPQIKQLIKNRLNSYFHRTKRK
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
PVILTQILYVDQKEDFLKNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPK
CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSKAEKDQENKINESIKKVTRKINSTLRK
CHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TKNDNQSDILIEKSPNSNQKNPNKFKNKNPQETENLVFFKKENLKKSYENDAKKKIKKSL
CCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCHHCEEEEEHHHHHHHHHHHHHHHHHHHH
INSKNLPYNNKENVKNSRDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKS
HCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHC
NFITAINTKINKENNKKTSQKSNKIPKNA
CCEEEEECEECCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQA
CCCCEEECCCCHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHH
KIRGLFVTHGHEDHIGGIIFLVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINK
HHEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
NDTHRFESFTVDFTAQHSIPDAFGIRITSRHGSIMCTGDFRFDYTPIGNYTDFERLKEIG
CCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCEEEEECCCCCCHHHHHHHHC
NQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKALIEIG
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHC
IKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLA
CHHEEEHEEHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCCEEEEEECCCCCHHH
ALDRMSNRKHPKISIEPRDLIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHT
HHHHHCCCCCCEEEECCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEC
SGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSRTAIESGVDPKNVIIPENGQVFKMY
CCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEHHCHHHHHCCCCCCEEEECCCCCEEEEE
NQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSINGRI
CHHHHHCCCCCCCCCEEECCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEE
SVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPKSPPQIKQLIKNRLNSYFHRTKRK
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
PVILTQILYVDQKEDFLKNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPK
CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSKAEKDQENKINESIKKVTRKINSTLRK
CHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TKNDNQSDILIEKSPNSNQKNPNKFKNKNPQETENLVFFKKENLKKSYENDAKKKIKKSL
CCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCHHCEEEEEHHHHHHHHHHHHHHHHHHHH
INSKNLPYNNKENVKNSRDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKS
HCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHC
NFITAINTKINKENNKKTSQKSNKIPKNA
CCEEEEECEECCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA