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The map label for this gene is rarD [H]

Identifier: 68535843

GI number: 68535843

Start: 916304

End: 917179

Strand: Direct

Name: rarD [H]

Synonym: jk0768

Alternate gene names: 68535843

Gene position: 916304-917179 (Clockwise)

Preceding gene: 68535842

Following gene: 68535846

Centisome position: 37.21

GC content: 60.96

Gene sequence:

>876_bases
GTGATCTGGGGCCTGCTGTGCTACCTGATGTGGGGGCTCTTCCCCGCGTTCTTCCCCCTTTTGCAGCCGGCGACGCCGAT
GGAGATCCTGGCGCACCGTTTTGTGTGGACGTTGGTGTTCATGTTGTTGCTGCTCGCGGCGCTGCGCGGGTTCAAGCAGC
TGCGGGTAATCACGGCCCGTCAGTGGTGGATCGTCGCGGCCGCTGCGCTGTTGATCAGCGTGAACTGGGGGCTGTACATC
TACGCGGTGAACAACAACCACGTCGCCGACGCCGCCCTCGGATATTTTGTAAACCCACTGGTCAGCGTTCTATTGGGAGT
GATCGTGCTGGGGGAGAAGCTGCGCCGGCTGCAGATGGTTTCCGTCGGCATCGCCACTATCGCCGTCGTGGTTCTGACGG
TCGCACTTGGTTCGCCGCCGATCATTTCTTTGAGCCTGGCCTTTAGCTTCGGGTTCTACGGGCTGGTGAAAAAGCAAGTT
CGTTTGACGCCCATTCAGTCCCTCACCGCCGAAACTCTTGTACTGGCGCCGATAGGGCTGATCTACCTGGGGTTCCTACA
ATCCCAGGGCACCAATACGTATGTACAGCTGGGAGCTGGTCACGCAGCGCTGCTGATGCTGGCGGGCGTGGTGACCGCGC
TGCCGCTGCTGTGCTTCGCCCGCGCCGCACAGGAAATGTCGCTGACTAGCCTGGGCATGGTGCAGTACATCACGCCCGTG
ATCCAGATGCTCTGGGCGGTATTTGTGAACAACGAGCACATCGAGCCCGCCCGCTGGGTTGGCTTCGTGTTGATCTGGAT
CGCGGTGATCGTCTTCATCGTGGACCTAGTGGGGCACCGCCCGCCGCGTGTGCGGCGGGTAAAGAAGCTGCATTAG

Upstream 100 bases:

>100_bases
ACAGCTCCGGGAGCTCGCGCAGCGCGCATACGCCGTGGAGCCGGCGGACCCCGAGGCGGTCTACGGACGTATTGGAATTC
GACCGATGGGAGCTAGATAA

Downstream 100 bases:

>100_bases
GCCAGCCCGAAAACGCGGTCGATCATCGCGTTGCGCATCATGCCCTGCGGATCCACCTTCGCGCGGATCTCGCAGGCCCG
CGCCAGATCCTCGTGCCGCT

Product: putative RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MIWGLLCYLMWGLFPAFFPLLQPATPMEILAHRFVWTLVFMLLLLAALRGFKQLRVITARQWWIVAAAALLISVNWGLYI
YAVNNNHVADAALGYFVNPLVSVLLGVIVLGEKLRRLQMVSVGIATIAVVVLTVALGSPPIISLSLAFSFGFYGLVKKQV
RLTPIQSLTAETLVLAPIGLIYLGFLQSQGTNTYVQLGAGHAALLMLAGVVTALPLLCFARAAQEMSLTSLGMVQYITPV
IQMLWAVFVNNEHIEPARWVGFVLIWIAVIVFIVDLVGHRPPRVRRVKKLH

Sequences:

>Translated_291_residues
MIWGLLCYLMWGLFPAFFPLLQPATPMEILAHRFVWTLVFMLLLLAALRGFKQLRVITARQWWIVAAAALLISVNWGLYI
YAVNNNHVADAALGYFVNPLVSVLLGVIVLGEKLRRLQMVSVGIATIAVVVLTVALGSPPIISLSLAFSFGFYGLVKKQV
RLTPIQSLTAETLVLAPIGLIYLGFLQSQGTNTYVQLGAGHAALLMLAGVVTALPLLCFARAAQEMSLTSLGMVQYITPV
IQMLWAVFVNNEHIEPARWVGFVLIWIAVIVFIVDLVGHRPPRVRRVKKLH
>Mature_291_residues
MIWGLLCYLMWGLFPAFFPLLQPATPMEILAHRFVWTLVFMLLLLAALRGFKQLRVITARQWWIVAAAALLISVNWGLYI
YAVNNNHVADAALGYFVNPLVSVLLGVIVLGEKLRRLQMVSVGIATIAVVVLTVALGSPPIISLSLAFSFGFYGLVKKQV
RLTPIQSLTAETLVLAPIGLIYLGFLQSQGTNTYVQLGAGHAALLMLAGVVTALPLLCFARAAQEMSLTSLGMVQYITPV
IQMLWAVFVNNEHIEPARWVGFVLIWIAVIVFIVDLVGHRPPRVRRVKKLH

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=288, Percent_Identity=39.9305555555556, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32138; Mature: 32138

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWGLLCYLMWGLFPAFFPLLQPATPMEILAHRFVWTLVFMLLLLAALRGFKQLRVITAR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWWIVAAAALLISVNWGLYIYAVNNNHVADAALGYFVNPLVSVLLGVIVLGEKLRRLQMV
HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGIATIAVVVLTVALGSPPIISLSLAFSFGFYGLVKKQVRLTPIQSLTAETLVLAPIGL
HHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
IYLGFLQSQGTNTYVQLGAGHAALLMLAGVVTALPLLCFARAAQEMSLTSLGMVQYITPV
HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQMLWAVFVNNEHIEPARWVGFVLIWIAVIVFIVDLVGHRPPRVRRVKKLH
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MIWGLLCYLMWGLFPAFFPLLQPATPMEILAHRFVWTLVFMLLLLAALRGFKQLRVITAR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWWIVAAAALLISVNWGLYIYAVNNNHVADAALGYFVNPLVSVLLGVIVLGEKLRRLQMV
HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGIATIAVVVLTVALGSPPIISLSLAFSFGFYGLVKKQVRLTPIQSLTAETLVLAPIGL
HHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
IYLGFLQSQGTNTYVQLGAGHAALLMLAGVVTALPLLCFARAAQEMSLTSLGMVQYITPV
HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQMLWAVFVNNEHIEPARWVGFVLIWIAVIVFIVDLVGHRPPRVRRVKKLH
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA