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The map label for this gene is yggS [C]

Identifier: 68535830

GI number: 68535830

Start: 902410

End: 903165

Strand: Direct

Name: yggS [C]

Synonym: jk0755

Alternate gene names: 68535830

Gene position: 902410-903165 (Clockwise)

Preceding gene: 68535829

Following gene: 68535831

Centisome position: 36.65

GC content: 62.96

Gene sequence:

>756_bases
ATGACTGAGCAGAAGAGCGTGAGCAGTGATCACCAGGCGGCGAATGACCTCCCCGGTGGTACGGCGAACCTCAGCCCTCG
CGCGCAGGAGATTGCCGAGAACCTGGCGCGCGTAAGGCGCCGCATTGCGGTGGCAGGAGGGGCGGATCTGCTGCCAATCA
CCAAGTTTCACCCGGTTGAAGACGTGAAGTTGCTGGCACAGCTGGGCGTCACCGCCGTTGGCGAGAACCGCGAACAGGAA
GCGCGCGACAAGCACGCGCAGTTGGCAGACACAGGCCTGCAGTTCCACATGGTGGGGCAGGTGCAGACGAAGAAAGCGAA
CTCCGTCGCGCGGTGGGCAGCCGCCGTGCACACTCTGGACTCGTTGAAGTTGCTAAATGCCCTGGACCGTGGTGCGGCTC
TGGCTCTAGAGCGCGGAGATCGAAACGATCGTCTGCCGGTGTTGCTGCAATTCAGCGCTGACGGGGACCCACAGCGCGGC
GGAGCAGTGGAGGCTGACATCGACGAGCTGGCCGATGCCGTGGCTGCAGCTGAAAATCTGGAGCTGCGGGGACTGATGAC
GGTACCGCCTCTCGATGCTGATCCCGCGGCCGTTTTCGCGCGGGGGCGAAAACTGGTTGAGCGCATCACTGACCGTGCAG
TAGGTGCTCCCGTGTACTCCGCAGGAATGAGCGGTGACCTGGAGATTGCCATCGCGGAAGGGTCCACCCTGGTGCGTGTC
GGTACGGATATAATGGGCGCGCGACCAGTACTTTAA

Upstream 100 bases:

>100_bases
CCGACCCGCGTTGCACCATCGACTCAGAGCATGCCTCCCGGTTCTTCTCCTACCGTCGAGAAGGCACAACCGGCCGCCAG
GCGGGCGTAGTGTGGATGCC

Downstream 100 bases:

>100_bases
ACCACATAGCTATTTACGGCCCTTAACGAGCCAATAGAATCAAGTAACGGAAGGTTCCTACAGAGCAATGGCAGAAAACT
TCATGGACAAGACCAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTEQKSVSSDHQAANDLPGGTANLSPRAQEIAENLARVRRRIAVAGGADLLPITKFHPVEDVKLLAQLGVTAVGENREQE
ARDKHAQLADTGLQFHMVGQVQTKKANSVARWAAAVHTLDSLKLLNALDRGAALALERGDRNDRLPVLLQFSADGDPQRG
GAVEADIDELADAVAAAENLELRGLMTVPPLDADPAAVFARGRKLVERITDRAVGAPVYSAGMSGDLEIAIAEGSTLVRV
GTDIMGARPVL

Sequences:

>Translated_251_residues
MTEQKSVSSDHQAANDLPGGTANLSPRAQEIAENLARVRRRIAVAGGADLLPITKFHPVEDVKLLAQLGVTAVGENREQE
ARDKHAQLADTGLQFHMVGQVQTKKANSVARWAAAVHTLDSLKLLNALDRGAALALERGDRNDRLPVLLQFSADGDPQRG
GAVEADIDELADAVAAAENLELRGLMTVPPLDADPAAVFARGRKLVERITDRAVGAPVYSAGMSGDLEIAIAEGSTLVRV
GTDIMGARPVL
>Mature_250_residues
TEQKSVSSDHQAANDLPGGTANLSPRAQEIAENLARVRRRIAVAGGADLLPITKFHPVEDVKLLAQLGVTAVGENREQEA
RDKHAQLADTGLQFHMVGQVQTKKANSVARWAAAVHTLDSLKLLNALDRGAALALERGDRNDRLPVLLQFSADGDPQRGG
AVEADIDELADAVAAAENLELRGLMTVPPLDADPAAVFARGRKLVERITDRAVGAPVYSAGMSGDLEIAIAEGSTLVRVG
TDIMGARPVL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=35.1931330472103, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=32.5471698113208, Blast_Score=86, Evalue=5e-18,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=29.7674418604651, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26539; Mature: 26408

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQKSVSSDHQAANDLPGGTANLSPRAQEIAENLARVRRRIAVAGGADLLPITKFHPVE
CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
DVKLLAQLGVTAVGENREQEARDKHAQLADTGLQFHMVGQVQTKKANSVARWAAAVHTLD
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
SLKLLNALDRGAALALERGDRNDRLPVLLQFSADGDPQRGGAVEADIDELADAVAAAENL
HHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC
ELRGLMTVPPLDADPAAVFARGRKLVERITDRAVGAPVYSAGMSGDLEIAIAEGSTLVRV
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCEEEEE
GTDIMGARPVL
CCCCCCCCCCC
>Mature Secondary Structure 
TEQKSVSSDHQAANDLPGGTANLSPRAQEIAENLARVRRRIAVAGGADLLPITKFHPVE
CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
DVKLLAQLGVTAVGENREQEARDKHAQLADTGLQFHMVGQVQTKKANSVARWAAAVHTLD
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
SLKLLNALDRGAALALERGDRNDRLPVLLQFSADGDPQRGGAVEADIDELADAVAAAENL
HHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC
ELRGLMTVPPLDADPAAVFARGRKLVERITDRAVGAPVYSAGMSGDLEIAIAEGSTLVRV
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCEEEEE
GTDIMGARPVL
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9240446; 12948626 [H]