Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
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Accession | NC_007086 |
Length | 5,148,708 |
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The map label for this gene is yjjJ [H]
Identifier: 66766883
GI number: 66766883
Start: 650624
End: 651982
Strand: Reverse
Name: yjjJ [H]
Synonym: XC_0544
Alternate gene names: 66766883
Gene position: 651982-650624 (Counterclockwise)
Preceding gene: 66766888
Following gene: 77761094
Centisome position: 12.66
GC content: 62.69
Gene sequence:
>1359_bases GTGGAGCGCCTGATCACCACGCTGCGCGTCAACGGCCCCATGCGTGGGGCCGAGTTGGCGGTGCGCGTGGGCGTGAGCCG GCCGACTCTGTCTCGCCTAGTCGCAGATGCAGGCCCTGCGGTGCTGCGTTATGGCAGGGCGCGCAGCACCGGCTACGCGG CCACCGGTGAACTGCGGGGCGAGCGTATGTGGCCGCTCTATCGGATTGATCACGATGCCCGCGTCATACCGCTGGGCCAA CTATTGGCACTCCACGACGACCACTTCTTTGTCGAACTTTTGCAGGACAACCCCGTTCTATTGCATTCGCCATTGGACAC CGGCGTGTTCGCATCGCTGCCCTGGTTTATAGACGACCAAAGGCCGCAGGGATTTCTTGGTCGCAACCTGGCACACCGTA TTTCTGCGCCGTTGCGCCTTCCGGACAACTTGGCGCTGTGGTCGCCCAGGGACAACCTTGTGGCCATGCTGTCGGTTGGT CACGACCAGCCTGGCGATCTGCTGATCGGCGAGCGCGCACTGGCTCTGGCTTTGGCGGCGATCGAACACCCTGAAGTTAT CGCCACGCAGGCACGCACCGAGGAATATCTCAGTCGCGCCGAAGCTGCATTGCGCGGCGAGGCCGTTGGCTCGTCTGCCG CCGGCAAACAGCCGAAGTTCACCGCAGTGCTGAAGGAACGCGAAGCATACCGACCCGTGATCGTCAAGTTCACCGATCAG ATCGATCAACCCACCGGCCGGCGCTGGGCGGATCTTTTACAGATGGAATGGTTGGCCAGCCAGATTCTCGTTGCCGCCGG CATCCCTGCTGCGGCAACACAGGTACTGCAGGCAGGCGGGCGCGTCTTTCTCGAATCGACACGCTTCGATCGGACTGCTG CGTTAGGCCGACGCGGATTCGTCTCGCTGATGTCGCTGTTTGCGTCCTTTTATGGCGACGCAAACGTCAGCACCTGGCGA ACACTTGCTCCACTACTCAAACGCGATGGCTGGCTGAGCCCGGAAGACGCCGAGCGCCTGGAAGTGATCAGCTGGTTCGG GACCCTCATCGGCAATACCGACATGCACCTGGGCAATGCCGCACTGGTACTCGCCGATACCCTGCCCCTGCAGCTTGCCC CGGTGTACGACATGTTGCCGATGGCGCTGCGCCCGGCATCCAGTGGCGAAGTCGTGCACAGAGACATCGAGATTCCGCCG CCCACCGTGGATCAATTCGCCCAATGGCGGCGCGCTGCCGGAATGGCCGAGCAGTTCTGGCAACATGCGATCGACGACGA CACTCTGAGCGAACAGATGCGCGGCATTGCCACGCGCGCGTTGGCAAGCTTGCGTCGAACCGCATCACGCCTTGCCTGA
Upstream 100 bases:
>100_bases TGGTACGGCTCAGCGGGGGCAGGTCACGTAGAATTTCTTACGGCTTAGTATCGTTTCAGACATCGTTTCAAAAGCTGCGT TTCATGCCCCGTATAGCTGT
Downstream 100 bases:
>100_bases CCATGTGGCATCAACACCGCACCACACGCCGCGGTGCAATACCGTGACGTGCGATGCGGCACCACCTTCACTCAGAACGT AAACACATACTCCGCCGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MERLITTLRVNGPMRGAELAVRVGVSRPTLSRLVADAGPAVLRYGRARSTGYAATGELRGERMWPLYRIDHDARVIPLGQ LLALHDDHFFVELLQDNPVLLHSPLDTGVFASLPWFIDDQRPQGFLGRNLAHRISAPLRLPDNLALWSPRDNLVAMLSVG HDQPGDLLIGERALALALAAIEHPEVIATQARTEEYLSRAEAALRGEAVGSSAAGKQPKFTAVLKEREAYRPVIVKFTDQ IDQPTGRRWADLLQMEWLASQILVAAGIPAAATQVLQAGGRVFLESTRFDRTAALGRRGFVSLMSLFASFYGDANVSTWR TLAPLLKRDGWLSPEDAERLEVISWFGTLIGNTDMHLGNAALVLADTLPLQLAPVYDMLPMALRPASSGEVVHRDIEIPP PTVDQFAQWRRAAGMAEQFWQHAIDDDTLSEQMRGIATRALASLRRTASRLA
Sequences:
>Translated_452_residues MERLITTLRVNGPMRGAELAVRVGVSRPTLSRLVADAGPAVLRYGRARSTGYAATGELRGERMWPLYRIDHDARVIPLGQ LLALHDDHFFVELLQDNPVLLHSPLDTGVFASLPWFIDDQRPQGFLGRNLAHRISAPLRLPDNLALWSPRDNLVAMLSVG HDQPGDLLIGERALALALAAIEHPEVIATQARTEEYLSRAEAALRGEAVGSSAAGKQPKFTAVLKEREAYRPVIVKFTDQ IDQPTGRRWADLLQMEWLASQILVAAGIPAAATQVLQAGGRVFLESTRFDRTAALGRRGFVSLMSLFASFYGDANVSTWR TLAPLLKRDGWLSPEDAERLEVISWFGTLIGNTDMHLGNAALVLADTLPLQLAPVYDMLPMALRPASSGEVVHRDIEIPP PTVDQFAQWRRAAGMAEQFWQHAIDDDTLSEQMRGIATRALASLRRTASRLA >Mature_452_residues MERLITTLRVNGPMRGAELAVRVGVSRPTLSRLVADAGPAVLRYGRARSTGYAATGELRGERMWPLYRIDHDARVIPLGQ LLALHDDHFFVELLQDNPVLLHSPLDTGVFASLPWFIDDQRPQGFLGRNLAHRISAPLRLPDNLALWSPRDNLVAMLSVG HDQPGDLLIGERALALALAAIEHPEVIATQARTEEYLSRAEAALRGEAVGSSAAGKQPKFTAVLKEREAYRPVIVKFTDQ IDQPTGRRWADLLQMEWLASQILVAAGIPAAATQVLQAGGRVFLESTRFDRTAALGRRGFVSLMSLFASFYGDANVSTWR TLAPLLKRDGWLSPEDAERLEVISWFGTLIGNTDMHLGNAALVLADTLPLQLAPVYDMLPMALRPASSGEVVHRDIEIPP PTVDQFAQWRRAAGMAEQFWQHAIDDDTLSEQMRGIATRALASLRRTASRLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790845, Length=453, Percent_Identity=34.878587196468, Blast_Score=226, Evalue=2e-60,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012893 - InterPro: IPR012894 [H]
Pfam domain/function: PF07804 HipA_C; PF07805 HipA_N [H]
EC number: NA
Molecular weight: Translated: 49785; Mature: 49785
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERLITTLRVNGPMRGAELAVRVGVSRPTLSRLVADAGPAVLRYGRARSTGYAATGELRG CCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCC ERMWPLYRIDHDARVIPLGQLLALHDDHFFVELLQDNPVLLHSPLDTGVFASLPWFIDDQ CCCCCEEEECCCCEEEEHHHHHHHCCCCEEEEEECCCCEEEECCCCCCHHHCCCCEECCC RPQGFLGRNLAHRISAPLRLPDNLALWSPRDNLVAMLSVGHDQPGDLLIGERALALALAA CCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCEEECHHHHHHHHHH IEHPEVIATQARTEEYLSRAEAALRGEAVGSSAAGKQPKFTAVLKEREAYRPVIVKFTDQ HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECHH IDQPTGRRWADLLQMEWLASQILVAAGIPAAATQVLQAGGRVFLESTRFDRTAALGRRGF CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH VSLMSLFASFYGDANVSTWRTLAPLLKRDGWLSPEDAERLEVISWFGTLIGNTDMHLGNA HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE ALVLADTLPLQLAPVYDMLPMALRPASSGEVVHRDIEIPPPTVDQFAQWRRAAGMAEQFW EEEEEECCCCEECCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHH QHAIDDDTLSEQMRGIATRALASLRRTASRLA HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MERLITTLRVNGPMRGAELAVRVGVSRPTLSRLVADAGPAVLRYGRARSTGYAATGELRG CCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCC ERMWPLYRIDHDARVIPLGQLLALHDDHFFVELLQDNPVLLHSPLDTGVFASLPWFIDDQ CCCCCEEEECCCCEEEEHHHHHHHCCCCEEEEEECCCCEEEECCCCCCHHHCCCCEECCC RPQGFLGRNLAHRISAPLRLPDNLALWSPRDNLVAMLSVGHDQPGDLLIGERALALALAA CCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCEEECHHHHHHHHHH IEHPEVIATQARTEEYLSRAEAALRGEAVGSSAAGKQPKFTAVLKEREAYRPVIVKFTDQ HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECHH IDQPTGRRWADLLQMEWLASQILVAAGIPAAATQVLQAGGRVFLESTRFDRTAALGRRGF CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH VSLMSLFASFYGDANVSTWRTLAPLLKRDGWLSPEDAERLEVISWFGTLIGNTDMHLGNA HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE ALVLADTLPLQLAPVYDMLPMALRPASSGEVVHRDIEIPPPTVDQFAQWRRAAGMAEQFW EEEEEECCCCEECCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHH QHAIDDDTLSEQMRGIATRALASLRRTASRLA HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 3299264 [H]