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The map label for this gene is sodA [H]

Identifier: 66766749

GI number: 66766749

Start: 470704

End: 471408

Strand: Reverse

Name: sodA [H]

Synonym: XC_0407

Alternate gene names: 66766749

Gene position: 471408-470704 (Counterclockwise)

Preceding gene: 66766756

Following gene: 66766748

Centisome position: 9.16

GC content: 58.16

Gene sequence:

>705_bases
ATGAATTGCCGATCCATTAAAGCGTTAGGCCTCAGCGCCCTGCTGGCACTTTCAAATATTGCAGTCGCAGCCGACGCACC
TAAAGTCGCCTTCTCGCTACCGGCGCTGCCCTACGCGACCAATGCATTGGAACCGGCCATCGACACGCAAACGATGGAGA
TCCATCACGCACGCCATCACAAGGCCTACGTCGATAACCTCAACAACAAGGTCGAAGACTACCCAGCGTTGTCGACCACG
TCTGTCGAAGACATCCAGGCCCATATCTCTCTGTACGACGCGGCGGTCCGCAACAATGCCGGCGGCCATTACAACCACAG
CCTGTTCTGGACGCTGATGGCACCCGCAGGCCAGGGAGGAACGATATCGCCGGCCCTCAAGGCAAAACTGGCACAGTCGT
TCGGCTCCGAAGAGGCCTTCAAAACCAAGTTCTCCGAGGCGGCCACAAAAATTTTCGGCTCGGGATGGGCCTGGTTGATC
GTCAAACCAGACGGCTCACTGGCGATCACCACCACGTCCAATCAGGACAACCCATTGATGGATGTCGTGTCCGACCGCGG
CACGCCACTGCTGGCCCTGGATATGTGGGAACACGCGTATTACCTGCATTACCAAAACAAGCGGGCCGACTACATCAAGG
CGTGGTGGTCGGTGGTCAACTGGACCGAGGTCAACGCCCGCTTTGGCGCTGCAGCCAAGCGCTGA

Upstream 100 bases:

>100_bases
TGACTCCAACGGACCGACACAGTCCGCCGTGCGCTTGTGCTTTCATGCCAAACGCCTGCTAGCACCCTGTTCGTCCTTCT
TGAAATCGGAGCAAAACACC

Downstream 100 bases:

>100_bases
CCGGCCAATCCTCGCCCACGCCCATGGCTCTTCGAAGATTCCTTGCCCACGCTATCCGCAGCTGGGCCGCCATGGCGGCC
TTGCTGCTGGTGGTTGCGCC

Product: superoxidase dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNCRSIKALGLSALLALSNIAVAADAPKVAFSLPALPYATNALEPAIDTQTMEIHHARHHKAYVDNLNNKVEDYPALSTT
SVEDIQAHISLYDAAVRNNAGGHYNHSLFWTLMAPAGQGGTISPALKAKLAQSFGSEEAFKTKFSEAATKIFGSGWAWLI
VKPDGSLAITTTSNQDNPLMDVVSDRGTPLLALDMWEHAYYLHYQNKRADYIKAWWSVVNWTEVNARFGAAAKR

Sequences:

>Translated_234_residues
MNCRSIKALGLSALLALSNIAVAADAPKVAFSLPALPYATNALEPAIDTQTMEIHHARHHKAYVDNLNNKVEDYPALSTT
SVEDIQAHISLYDAAVRNNAGGHYNHSLFWTLMAPAGQGGTISPALKAKLAQSFGSEEAFKTKFSEAATKIFGSGWAWLI
VKPDGSLAITTTSNQDNPLMDVVSDRGTPLLALDMWEHAYYLHYQNKRADYIKAWWSVVNWTEVNARFGAAAKR
>Mature_234_residues
MNCRSIKALGLSALLALSNIAVAADAPKVAFSLPALPYATNALEPAIDTQTMEIHHARHHKAYVDNLNNKVEDYPALSTT
SVEDIQAHISLYDAAVRNNAGGHYNHSLFWTLMAPAGQGGTISPALKAKLAQSFGSEEAFKTKFSEAATKIFGSGWAWLI
VKPDGSLAITTTSNQDNPLMDVVSDRGTPLLALDMWEHAYYLHYQNKRADYIKAWWSVVNWTEVNARFGAAAKR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=203, Percent_Identity=45.8128078817734, Blast_Score=172, Evalue=3e-43,
Organism=Homo sapiens, GI67782305, Length=203, Percent_Identity=45.8128078817734, Blast_Score=172, Evalue=3e-43,
Organism=Homo sapiens, GI67782309, Length=203, Percent_Identity=37.9310344827586, Blast_Score=126, Evalue=2e-29,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=49.0384615384615, Blast_Score=208, Evalue=2e-55,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=44.3877551020408, Blast_Score=168, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=40.6862745098039, Blast_Score=149, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17569479, Length=210, Percent_Identity=39.0476190476191, Blast_Score=149, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6321796, Length=224, Percent_Identity=37.9464285714286, Blast_Score=142, Evalue=5e-35,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=39.9014778325123, Blast_Score=143, Evalue=1e-34,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25588; Mature: 25588

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCRSIKALGLSALLALSNIAVAADAPKVAFSLPALPYATNALEPAIDTQTMEIHHARHH
CCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHH
KAYVDNLNNKVEDYPALSTTSVEDIQAHISLYDAAVRNNAGGHYNHSLFWTLMAPAGQGG
HHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
TISPALKAKLAQSFGSEEAFKTKFSEAATKIFGSGWAWLIVKPDGSLAITTTSNQDNPLM
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCHH
DVVSDRGTPLLALDMWEHAYYLHYQNKRADYIKAWWSVVNWTEVNARFGAAAKR
HHHHCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHCEEECCCCCCCCCCC
>Mature Secondary Structure
MNCRSIKALGLSALLALSNIAVAADAPKVAFSLPALPYATNALEPAIDTQTMEIHHARHH
CCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHH
KAYVDNLNNKVEDYPALSTTSVEDIQAHISLYDAAVRNNAGGHYNHSLFWTLMAPAGQGG
HHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
TISPALKAKLAQSFGSEEAFKTKFSEAATKIFGSGWAWLIVKPDGSLAITTTSNQDNPLM
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCHH
DVVSDRGTPLLALDMWEHAYYLHYQNKRADYIKAWWSVVNWTEVNARFGAAAKR
HHHHCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9074511 [H]