Click here to switch to the map view.

The map label for this gene is pobB [H]

Identifier: 66766717

GI number: 66766717

Start: 435747

End: 436730

Strand: Reverse

Name: pobB [H]

Synonym: XC_0374

Alternate gene names: 66766717

Gene position: 436730-435747 (Counterclockwise)

Preceding gene: 66766718

Following gene: 66766716

Centisome position: 8.48

GC content: 67.78

Gene sequence:

>984_bases
ATGCGTAAAGACACCCATTGGCACCACGCCCGCGTGGTGAGTGTTGCCGATGCCTGCCAGGGCGTGCGCGAGATCGTGCT
CGACCCGGGCGCGAACACGCGCAGTTTCGAGGTGGGCAGCCATCTGGATTTCCGCCTGCAGCTCCACGGGCGCGAGGATG
TGCGGTCCTATTCGCTGGTAGGCGAGCCCCGCGCCGATGGCTACTACCAGGTGGCGGTGCGGCAGATGCCCGAAAGCCGC
GGCGGCTCGCGGCATATGTGGACCTTGGCACCGGGCGACGTGGTGGAAATTTCGCCACCCAGCAATAACTTCGCGCTGGA
TGAAGCGGGTGAGGAAATCCTGCTGATTGCCGGCGGTATCGGCGTGACGCCCATCGTGGGCATGGCGCAGCGGCTGGCGC
GCCGGCATCAGGCGTTCCGCATGCTGTACGTGGGCCGCGCACGCGACACCATGGCCTATGTGGACACGCTGGAGGCGCTG
CTCGGCGCACGCCTGCAAGTGCATTGCGACGACCAGGCCGGCCCGCCGGATCTGGCCGCGGAACTGGCCACCTTGTCGCC
CAATGCCGAGGTCTATGTCTGCGGGCCGCTGGGCATGCTCGAAGCAGTGCGCCAGCAGTGGCACGCCGCCGGCCGGCCGC
GCGCGCGCCTGCATTTCGAGACCTTCGGCAACAGCGGGCGGGTGCCGGCACAGGCCTTCGTGGTCAAGTTGCCTGGACTG
GGCATGGAAGTGCAGGTGGCCGAGAACGTATCGATGCTCGACGCCCTGGCCGACGCCGGTGTGGAGCTGATTGCCGAATG
CCGACGCGGCGAATGTGGGTTGTGCGCGGTGGACGTGCTCGACACGGCGGCCGACATCGACCACCGCGACGTGTTCTTCA
GCGATGCGCAGCGCAGCGAGAATCGCAAGCTGTGCGCGTGCGTGTCGCGTGCGGTGGGCGGCAGCATCAGCATCGATACC
GGCTACCGCGCGGGCTCCGACTGA

Upstream 100 bases:

>100_bases
CGTGCGCTGTCGCCAGTGCCTGCAGCGCATCAACGCCACGCACGTGCTGCACAAGCGCCAGGCGCAGGCCGCATACCGGG
ATCGAAGCAAGGAGATCAGC

Downstream 100 bases:

>100_bases
GCGCGCAGGCATCGTGCTTGGGTCGCGTCATGCGACACCATCGCGGCGGTGTGAGCGACAGACCCCGTCGCCTTTCGGGG
CAGCCATAGTCGAGCCGTTT

Product: phenoxybenzoate dioxygenase beta subunit

Products: NA

Alternate protein names: 4-carboxydiphenyl ether; phenoxybenzoate dioxygenase subunit beta [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MRKDTHWHHARVVSVADACQGVREIVLDPGANTRSFEVGSHLDFRLQLHGREDVRSYSLVGEPRADGYYQVAVRQMPESR
GGSRHMWTLAPGDVVEISPPSNNFALDEAGEEILLIAGGIGVTPIVGMAQRLARRHQAFRMLYVGRARDTMAYVDTLEAL
LGARLQVHCDDQAGPPDLAAELATLSPNAEVYVCGPLGMLEAVRQQWHAAGRPRARLHFETFGNSGRVPAQAFVVKLPGL
GMEVQVAENVSMLDALADAGVELIAECRRGECGLCAVDVLDTAADIDHRDVFFSDAQRSENRKLCACVSRAVGGSISIDT
GYRAGSD

Sequences:

>Translated_327_residues
MRKDTHWHHARVVSVADACQGVREIVLDPGANTRSFEVGSHLDFRLQLHGREDVRSYSLVGEPRADGYYQVAVRQMPESR
GGSRHMWTLAPGDVVEISPPSNNFALDEAGEEILLIAGGIGVTPIVGMAQRLARRHQAFRMLYVGRARDTMAYVDTLEAL
LGARLQVHCDDQAGPPDLAAELATLSPNAEVYVCGPLGMLEAVRQQWHAAGRPRARLHFETFGNSGRVPAQAFVVKLPGL
GMEVQVAENVSMLDALADAGVELIAECRRGECGLCAVDVLDTAADIDHRDVFFSDAQRSENRKLCACVSRAVGGSISIDT
GYRAGSD
>Mature_327_residues
MRKDTHWHHARVVSVADACQGVREIVLDPGANTRSFEVGSHLDFRLQLHGREDVRSYSLVGEPRADGYYQVAVRQMPESR
GGSRHMWTLAPGDVVEISPPSNNFALDEAGEEILLIAGGIGVTPIVGMAQRLARRHQAFRMLYVGRARDTMAYVDTLEAL
LGARLQVHCDDQAGPPDLAAELATLSPNAEVYVCGPLGMLEAVRQQWHAAGRPRARLHFETFGNSGRVPAQAFVVKLPGL
GMEVQVAENVSMLDALADAGVELIAECRRGECGLCAVDVLDTAADIDHRDVFFSDAQRSENRKLCACVSRAVGGSISIDT
GYRAGSD

Specific function: Degrades exclusively diarylether compounds having carboxyl groups in the 3- or 4-position. Yields a hemiacetal that spontaneously hydrolyzes to phenol and protocatechuate [H]

COG id: COG1018

COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain [H]

Homologues:

Organism=Escherichia coli, GI1788104, Length=300, Percent_Identity=32.6666666666667, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787098, Length=275, Percent_Identity=26.9090909090909, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787658, Length=312, Percent_Identity=25.3205128205128, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788903, Length=240, Percent_Identity=26.25, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR017927
- InterPro:   IPR001041
- InterPro:   IPR008333
- InterPro:   IPR001433
- InterPro:   IPR000951
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35458; Mature: 35458

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKDTHWHHARVVSVADACQGVREIVLDPGANTRSFEVGSHLDFRLQLHGREDVRSYSLV
CCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCEEEEEEECCCHHHHHEEEC
GEPRADGYYQVAVRQMPESRGGSRHMWTLAPGDVVEISPPSNNFALDEAGEEILLIAGGI
CCCCCCCEEEHHHHHCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCC
GVTPIVGMAQRLARRHQAFRMLYVGRARDTMAYVDTLEALLGARLQVHCDDQAGPPDLAA
CHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
ELATLSPNAEVYVCGPLGMLEAVRQQWHAAGRPRARLHFETFGNSGRVPAQAFVVKLPGL
HHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCC
GMEVQVAENVSMLDALADAGVELIAECRRGECGLCAVDVLDTAADIDHRDVFFSDAQRSE
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEECCHHCCC
NRKLCACVSRAVGGSISIDTGYRAGSD
CCHHHHHHHHHCCCEEEECCCCCCCCC
>Mature Secondary Structure
MRKDTHWHHARVVSVADACQGVREIVLDPGANTRSFEVGSHLDFRLQLHGREDVRSYSLV
CCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCEEEEEEECCCHHHHHEEEC
GEPRADGYYQVAVRQMPESRGGSRHMWTLAPGDVVEISPPSNNFALDEAGEEILLIAGGI
CCCCCCCEEEHHHHHCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCC
GVTPIVGMAQRLARRHQAFRMLYVGRARDTMAYVDTLEALLGARLQVHCDDQAGPPDLAA
CHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
ELATLSPNAEVYVCGPLGMLEAVRQQWHAAGRPRARLHFETFGNSGRVPAQAFVVKLPGL
HHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCC
GMEVQVAENVSMLDALADAGVELIAECRRGECGLCAVDVLDTAADIDHRDVFFSDAQRSE
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEECCHHCCC
NRKLCACVSRAVGGSISIDTGYRAGSD
CCHHHHHHHHHCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: FMN. [C]

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7710319 [H]