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The map label for this gene is ykgD [C]

Identifier: 66766666

GI number: 66766666

Start: 381373

End: 382290

Strand: Reverse

Name: ykgD [C]

Synonym: XC_0323

Alternate gene names: 66766666

Gene position: 382290-381373 (Counterclockwise)

Preceding gene: 66766668

Following gene: 66766660

Centisome position: 7.42

GC content: 66.12

Gene sequence:

>918_bases
ATGCTCGACCCGCTTGCTGAGGTCGTCCTGCTGCTGAGGCCGGCACCAGGGTTCTCCAAACTTGTCCTTGGCGCTGGTGT
GTGGTCGGCGTACCGCTCCGATGCGCCCGGCCCGTTTTACTGCGCGGTGATCGAGGGAAAGTGCCGGCTGGCGCTTGAAG
GTGGCCAGGCGCATGTGCTGGAAGCAGGCGACTTTGTGCTGGCACCCGCCATGCTTGCTGTCACGCTCTCCAGCGCGCAG
GCGTCGACCGGGCAAGCCCACACCGTGCCGACCCAGGCGGACGATGGCAGTTTCCGCATCGGCGCGCAGGACGGCCCGGC
GGATGTTCGCATCGTGATTGGGCATTGCAGCTTCGGCTCGCCGGATGCGGCGCTGCTGGTGTCGCTGCTGCCACGGTTGG
TGCATGTGCGCGGTGAGCTGCGGCTCACCACGCTGGTGAATCTGGTTGGTGAGGAGGCGCGCACAAACCGACCCGCCCGT
GCGGTGGTGCTTGCACGACTGTTGGAAGTGCTGTTGATCGAAGCATTACGCTCGCTGACGGCGAGCGACACCACTCCAGG
ACTGGTGCGGGCGTTATCCGATGCACGCCTGGCGGCGGCGCTGCGCGCCATGCACGGCGCACCGGCGCATGCCTGGACGA
TCGACGCATTGGCCAAGGAAGCGGCGCTGTCGAGGTCATCGTTCTTTGCGCGCTTCAACCGTGCGATGGGTGTGACGCCG
ATGGAGTATCTGCTGGCATGGCGCATGGCGCTGGCAAAGACGCTGCTGTCAGAACAGGGGCTTGGCGTGGCGCAGGCGGC
GCAGCGGGTGGGGTACGGCTCGGCCAGCAGTTTCAGCGTTGCCTTCACTCGCCACACTGGCAGCCCACCATCGCAGTACG
CCCGCGTGCGCACTGCAACCTCGTTAGACGCTGTGTAA

Upstream 100 bases:

>100_bases
GCATGAAGCGCCCTCGGTGACGGTGTGAGGATCTACGTTAGGCTGCCCAGGTCGCACTTTCGATATTCCAGAGTGCTTAA
TCCATTAGCGAGAGTCCAAT

Downstream 100 bases:

>100_bases
CGGCACCCAATGCCGACAGGCCCGCGCGCGCGGTGACGCGCCTGCAGCTGCGGTGAGAGACAGCTGCAGTTGCGAGCTTG
CAGCGCTCCGCTAGCGAAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLDPLAEVVLLLRPAPGFSKLVLGAGVWSAYRSDAPGPFYCAVIEGKCRLALEGGQAHVLEAGDFVLAPAMLAVTLSSAQ
ASTGQAHTVPTQADDGSFRIGAQDGPADVRIVIGHCSFGSPDAALLVSLLPRLVHVRGELRLTTLVNLVGEEARTNRPAR
AVVLARLLEVLLIEALRSLTASDTTPGLVRALSDARLAAALRAMHGAPAHAWTIDALAKEAALSRSSFFARFNRAMGVTP
MEYLLAWRMALAKTLLSEQGLGVAQAAQRVGYGSASSFSVAFTRHTGSPPSQYARVRTATSLDAV

Sequences:

>Translated_305_residues
MLDPLAEVVLLLRPAPGFSKLVLGAGVWSAYRSDAPGPFYCAVIEGKCRLALEGGQAHVLEAGDFVLAPAMLAVTLSSAQ
ASTGQAHTVPTQADDGSFRIGAQDGPADVRIVIGHCSFGSPDAALLVSLLPRLVHVRGELRLTTLVNLVGEEARTNRPAR
AVVLARLLEVLLIEALRSLTASDTTPGLVRALSDARLAAALRAMHGAPAHAWTIDALAKEAALSRSSFFARFNRAMGVTP
MEYLLAWRMALAKTLLSEQGLGVAQAAQRVGYGSASSFSVAFTRHTGSPPSQYARVRTATSLDAV
>Mature_305_residues
MLDPLAEVVLLLRPAPGFSKLVLGAGVWSAYRSDAPGPFYCAVIEGKCRLALEGGQAHVLEAGDFVLAPAMLAVTLSSAQ
ASTGQAHTVPTQADDGSFRIGAQDGPADVRIVIGHCSFGSPDAALLVSLLPRLVHVRGELRLTTLVNLVGEEARTNRPAR
AVVLARLLEVLLIEALRSLTASDTTPGLVRALSDARLAAALRAMHGAPAHAWTIDALAKEAALSRSSFFARFNRAMGVTP
MEYLLAWRMALAKTLLSEQGLGVAQAAQRVGYGSASSFSVAFTRHTGSPPSQYARVRTATSLDAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=154, Percent_Identity=33.1168831168831, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32045; Mature: 32045

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDPLAEVVLLLRPAPGFSKLVLGAGVWSAYRSDAPGPFYCAVIEGKCRLALEGGQAHVL
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCEEEE
EAGDFVLAPAMLAVTLSSAQASTGQAHTVPTQADDGSFRIGAQDGPADVRIVIGHCSFGS
ECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCC
PDAALLVSLLPRLVHVRGELRLTTLVNLVGEEARTNRPARAVVLARLLEVLLIEALRSLT
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ASDTTPGLVRALSDARLAAALRAMHGAPAHAWTIDALAKEAALSRSSFFARFNRAMGVTP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
MEYLLAWRMALAKTLLSEQGLGVAQAAQRVGYGSASSFSVAFTRHTGSPPSQYARVRTAT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
SLDAV
HCCCC
>Mature Secondary Structure
MLDPLAEVVLLLRPAPGFSKLVLGAGVWSAYRSDAPGPFYCAVIEGKCRLALEGGQAHVL
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCEEEE
EAGDFVLAPAMLAVTLSSAQASTGQAHTVPTQADDGSFRIGAQDGPADVRIVIGHCSFGS
ECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCC
PDAALLVSLLPRLVHVRGELRLTTLVNLVGEEARTNRPARAVVLARLLEVLLIEALRSLT
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ASDTTPGLVRALSDARLAAALRAMHGAPAHAWTIDALAKEAALSRSSFFARFNRAMGVTP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
MEYLLAWRMALAKTLLSEQGLGVAQAAQRVGYGSASSFSVAFTRHTGSPPSQYARVRTAT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
SLDAV
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]