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The map label for this gene is yedU [C]

Identifier: 66766392

GI number: 66766392

Start: 52242

End: 52919

Strand: Reverse

Name: yedU [C]

Synonym: XC_0042

Alternate gene names: 66766392

Gene position: 52919-52242 (Counterclockwise)

Preceding gene: 66766394

Following gene: 66766391

Centisome position: 1.03

GC content: 67.4

Gene sequence:

>678_bases
ATGCACATCAAGCATGTCTTGTTCGTACTGACAAACGCCGGCCAGATCGGTCCCCATCAGCGCCCCACCGGCTACTTCTT
CCCGGAAGTGGCGCACCCGGTCGAGGTGCTGGAGCAGGCTGGCATCGCGATCGAATTCGCCTCGCCTGCCGGTGGCGCGG
CACCGGAGGATGGCTACGACGCGTCTGATGCGGCGCAGCTGGCGTTTCGCCACAGCAGGGCTTTCGGCCGCATGGCGCAT
AGCCGCAAGTTGTCGGAAGTGGACGTGCGCGATTACGACGCCGTGTTCGTGCCCGGCGGGCTGGGCCCGATGGTGGATGT
CAGCGGGAACCGCGATGTGCAGGCGTTGATCAAGCAGGCGTGGGAGGCCGACATGCTGGTCGCCGCTGTCTGCCACGGCC
CGTCCGCGCTGCTGGGCATCACGCTGGACGATGGCACCGCTTTGGTCCAGGGCCGTCGCGTCACCGGTTTTTCCACCGCC
GAGGAGGACGGCTACGCGCGCGCCGATGTGCCGTTCGACCTTGAATCCGCCTTGCGCGAGGAAGGTGCGCTGTACGTTGC
CGGCGCAGACTGGCAGCCGCATGTGGTGGTGGACGGCACGCTGATCACCGGCCAGAACCCCGCCTCTGCCGGCCCGCTTG
CGCACGCACTGGTGGCCGCACTGCAGGTGCAGGCATGA

Upstream 100 bases:

>100_bases
ACAATCTGTCAGCCGCTCGCTGTCTACTGCCAGCACTGCACGCCTTCTATCGTCTCTCCACCGGCTGCTGCCGGACTCAA
CCACCCTCAAGGAGAGCGCA

Downstream 100 bases:

>100_bases
GCGCGCCGGCCCGCCCCATCGTGGTGGTGGCGCGCTGGAGCGTGCCTGCCAGCGCGCGCGCCATAGTGCTGGCGCTGCTG
CCAGAGCTGCAGCGGCAGTC

Product: NonF-related protein

Products: NA

Alternate protein names: ThiJ/PfpI Family Protein; ThiJ/PfpI Domain Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; DJ-1/PfpI Family; NonF-Related Protein; DJ-1/PfpI-Family Transcriptional Regulator; Peptidase; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase-Like Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Intracellular Protease/Amidase-Like; C56 Family Peptidase; Amidotransferase; PFPI-Like Cystiene Protease; Intracellular Protease Amidase; ThiJ/PfpI Protein; Regulatory Protein; ThiJ Protein; NonF Protein; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Transcriptional Regulator Fis Family; Protease; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; Fis Family Transcriptional Regulator; DJ-1/PfpI Family Transcriptional Regulator

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MHIKHVLFVLTNAGQIGPHQRPTGYFFPEVAHPVEVLEQAGIAIEFASPAGGAAPEDGYDASDAAQLAFRHSRAFGRMAH
SRKLSEVDVRDYDAVFVPGGLGPMVDVSGNRDVQALIKQAWEADMLVAAVCHGPSALLGITLDDGTALVQGRRVTGFSTA
EEDGYARADVPFDLESALREEGALYVAGADWQPHVVVDGTLITGQNPASAGPLAHALVAALQVQA

Sequences:

>Translated_225_residues
MHIKHVLFVLTNAGQIGPHQRPTGYFFPEVAHPVEVLEQAGIAIEFASPAGGAAPEDGYDASDAAQLAFRHSRAFGRMAH
SRKLSEVDVRDYDAVFVPGGLGPMVDVSGNRDVQALIKQAWEADMLVAAVCHGPSALLGITLDDGTALVQGRRVTGFSTA
EEDGYARADVPFDLESALREEGALYVAGADWQPHVVVDGTLITGQNPASAGPLAHALVAALQVQA
>Mature_225_residues
MHIKHVLFVLTNAGQIGPHQRPTGYFFPEVAHPVEVLEQAGIAIEFASPAGGAAPEDGYDASDAAQLAFRHSRAFGRMAH
SRKLSEVDVRDYDAVFVPGGLGPMVDVSGNRDVQALIKQAWEADMLVAAVCHGPSALLGITLDDGTALVQGRRVTGFSTA
EEDGYARADVPFDLESALREEGALYVAGADWQPHVVVDGTLITGQNPASAGPLAHALVAALQVQA

Specific function: Not Known. [C]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320742, Length=236, Percent_Identity=28.8135593220339, Blast_Score=93, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6324967, Length=210, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324975, Length=210, Percent_Identity=25.7142857142857, Blast_Score=76, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6323984, Length=226, Percent_Identity=25.6637168141593, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23674; Mature: 23674

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIKHVLFVLTNAGQIGPHQRPTGYFFPEVAHPVEVLEQAGIAIEFASPAGGAAPEDGYD
CCHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
ASDAAQLAFRHSRAFGRMAHSRKLSEVDVRDYDAVFVPGGLGPMVDVSGNRDVQALIKQA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEECCCCCCHHHHHHHH
WEADMLVAAVCHGPSALLGITLDDGTALVQGRRVTGFSTAEEDGYARADVPFDLESALRE
HCHHHEEEEECCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCEECCCCCCHHHHHHH
EGALYVAGADWQPHVVVDGTLITGQNPASAGPLAHALVAALQVQA
CCCEEEECCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MHIKHVLFVLTNAGQIGPHQRPTGYFFPEVAHPVEVLEQAGIAIEFASPAGGAAPEDGYD
CCHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
ASDAAQLAFRHSRAFGRMAHSRKLSEVDVRDYDAVFVPGGLGPMVDVSGNRDVQALIKQA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEECCCCCCHHHHHHHH
WEADMLVAAVCHGPSALLGITLDDGTALVQGRRVTGFSTAEEDGYARADVPFDLESALRE
HCHHHEEEEECCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCEECCCCCCHHHHHHH
EGALYVAGADWQPHVVVDGTLITGQNPASAGPLAHALVAALQVQA
CCCEEEECCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA