Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

Click here to switch to the map view.

The map label for this gene is ycgI [H]

Identifier: 66047203

GI number: 66047203

Start: 4723366

End: 4723983

Strand: Direct

Name: ycgI [H]

Synonym: Psyr_3976

Alternate gene names: 66047203

Gene position: 4723366-4723983 (Clockwise)

Preceding gene: 66047202

Following gene: 66047204

Centisome position: 77.51

GC content: 61.49

Gene sequence:

>618_bases
ATGAACTCACCCACTCATCTTTGCTGCGACGCGACCATCCCGGCCGGCGAGCCCTTTCTGGCCGAGGTCAAGGCCGGGCA
GACCGTGCGCATCCTCGACCTGCAAGGCAATCAGGCCGTCGACACGCTGTTTTTCAGCCTGAGCAACCCGCGTGAACGCT
ACGACGTGCAGCGCACCCTGCGCCGTCAGAACAGCGTGTACCTGACCACCGGCAGCGTGCTGTTTTCCAACCTCGGCCAG
CCGATGCTGACCATTGTCGATGACACCTGCGGTCGCCACGACACACTCGGTGGCGCGTGCGCGCAAGAGAGCAACACCGT
GCGCTACGCCCTGGAAAAGCGCTACATGCACAGCTGCCGCGACAACTATCTGCGCGCCTGTGTGCATGACGGCCGTCTGA
GCAAGGCCGACATCGGCCCCAACATCAATTTCTTCATGAACGTACCCGTGACCGCCGAAGGCGGCCTGACCTTCGAAGAC
GGTATTTCCGCGCCCGGCAAATACGTCGAGCTGCGCGCTGAAATGGACGTGATCGTGCTGATTTCCAACTGTCCACAGCT
CAACAACCCCTGCAACGGCTACAACCCGACGCCTGCGCAGTTGTTGATTCGCGACTGA

Upstream 100 bases:

>100_bases
AAGCCGACGCCAGCGTTGCCGAGCACTGCCGCACCTCGCGCCCGGAAAACGCGCGCGGCTTCATCAATACCGACCGCCTG
TTCGCCTGAGGAGCCTTGTC

Downstream 100 bases:

>100_bases
CCCGGCACCTGCCCTCAGCAACGGACGACCGTTGCGTAGATTGATCAATAGCGGGACGGCCCGCTTCCCATCACGAAACC
GAGTGCGACTGGGTTTCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNSPTHLCCDATIPAGEPFLAEVKAGQTVRILDLQGNQAVDTLFFSLSNPRERYDVQRTLRRQNSVYLTTGSVLFSNLGQ
PMLTIVDDTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRACVHDGRLSKADIGPNINFFMNVPVTAEGGLTFED
GISAPGKYVELRAEMDVIVLISNCPQLNNPCNGYNPTPAQLLIRD

Sequences:

>Translated_205_residues
MNSPTHLCCDATIPAGEPFLAEVKAGQTVRILDLQGNQAVDTLFFSLSNPRERYDVQRTLRRQNSVYLTTGSVLFSNLGQ
PMLTIVDDTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRACVHDGRLSKADIGPNINFFMNVPVTAEGGLTFED
GISAPGKYVELRAEMDVIVLISNCPQLNNPCNGYNPTPAQLLIRD
>Mature_205_residues
MNSPTHLCCDATIPAGEPFLAEVKAGQTVRILDLQGNQAVDTLFFSLSNPRERYDVQRTLRRQNSVYLTTGSVLFSNLGQ
PMLTIVDDTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRACVHDGRLSKADIGPNINFFMNVPVTAEGGLTFED
GISAPGKYVELRAEMDVIVLISNCPQLNNPCNGYNPTPAQLLIRD

Specific function: Unknown

COG id: COG3665

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018959 [H]

Pfam domain/function: PF09347 DUF1989 [H]

EC number: NA

Molecular weight: Translated: 22615; Mature: 22615

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPTHLCCDATIPAGEPFLAEVKAGQTVRILDLQGNQAVDTLFFSLSNPRERYDVQRTL
CCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHH
RRQNSVYLTTGSVLFSNLGQPMLTIVDDTCGRHDTLGGACAQESNTVRYALEKRYMHSCR
HHCCCEEEEEHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DNYLRACVHDGRLSKADIGPNINFFMNVPVTAEGGLTFEDGISAPGKYVELRAEMDVIVL
HHHHHHHHCCCCCCCCCCCCCCEEEEECCEECCCCEEECCCCCCCCCEEEEEECCEEEEE
ISNCPQLNNPCNGYNPTPAQLLIRD
EECCCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MNSPTHLCCDATIPAGEPFLAEVKAGQTVRILDLQGNQAVDTLFFSLSNPRERYDVQRTL
CCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHH
RRQNSVYLTTGSVLFSNLGQPMLTIVDDTCGRHDTLGGACAQESNTVRYALEKRYMHSCR
HHCCCEEEEEHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DNYLRACVHDGRLSKADIGPNINFFMNVPVTAEGGLTFEDGISAPGKYVELRAEMDVIVL
HHHHHHHHCCCCCCCCCCCCCCEEEEECCEECCCCEEECCCCCCCCCEEEEEECCEEEEE
ISNCPQLNNPCNGYNPTPAQLLIRD
EECCCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 10568751 [H]