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The map label for this gene is phnF [H]

Identifier: 66045490

GI number: 66045490

Start: 2616301

End: 2617020

Strand: Direct

Name: phnF [H]

Synonym: Psyr_2250

Alternate gene names: 66045490

Gene position: 2616301-2617020 (Clockwise)

Preceding gene: 66045489

Following gene: 66045491

Centisome position: 42.93

GC content: 63.06

Gene sequence:

>720_bases
ATGCAGTTGTCTAGACAAGTTAGCCCGATGTACCACGAGCTCGCCAACATCTTGCGTGAAGAGCTGACCACCTATCAGCC
CGGCGATTTCCTGCCCGCCGAATTTCAGCTGGCCGAGCGCTTCAGCGTCAACCGCCACACCATTCGCCGCGCGGTCGATG
AACTGGTGCGTGAGGGCAGCGTGTTGCGACGTCAGGGCAAAGGCACTCAAGTGCTGGAGCGTCCGCTGATTTATCCGATG
CAGGCTGATAGCGCCTATAGCAAATCCTGGTCGGCGCAGGGCCTGGGCGTGGAAGCGATCCTGCTGCGTCGTCAGGAATG
TCAGGCCAGCCGTGAAGATGCCCAGCATCTGGGAGTGGACGAGCACGCGCCGCTGATCGAACTGCAGACACTGCGCAAAC
TGGACGGCCAGGCGGTCAGCCTGATCTTCCACCGCTACAGCGCCCGTTACAGCGATTTGCTGGCCGATTACCGCGGCGGC
TCGGTGCGCCAGTACCTGGCTGAGCGCGAGTTGCCGTTGAGCCGTGCGCAGAGCCTGATCGGCGCACGCCTGCCGTCCCG
TGAAGAGGCCGCGTGGTTGCTGATGCCCAGACACATGCCGGCGCTGACCGTACTGACGGTTTCCTGCGACGCGGCGGGGC
TGCCGGTGGAGCTTTCCCGCTCGGTCAGCCGCGCCGATCGTTTCCAGTATCAAGTGGCGACTCCTTTCAAGACGACCTGA

Upstream 100 bases:

>100_bases
GATCATCGTTGTGGTAAGCGTCATCGACATCATGTCGCAGCGCCTGCGCAAGCAATTCATCTGACAGAAGAGGGGTGTTC
AATGAACACTTTTTTTAACC

Downstream 100 bases:

>100_bases
CACCGAGGTGTTCCATGCAAGCAACTCCCGAAACAACGGCGCGTCAGCACTGGATGGGCGTACTGGCCCGCGCTCATGCC
GATCAGCCGAGCCGCGAGCA

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MQLSRQVSPMYHELANILREELTTYQPGDFLPAEFQLAERFSVNRHTIRRAVDELVREGSVLRRQGKGTQVLERPLIYPM
QADSAYSKSWSAQGLGVEAILLRRQECQASREDAQHLGVDEHAPLIELQTLRKLDGQAVSLIFHRYSARYSDLLADYRGG
SVRQYLAERELPLSRAQSLIGARLPSREEAAWLLMPRHMPALTVLTVSCDAAGLPVELSRSVSRADRFQYQVATPFKTT

Sequences:

>Translated_239_residues
MQLSRQVSPMYHELANILREELTTYQPGDFLPAEFQLAERFSVNRHTIRRAVDELVREGSVLRRQGKGTQVLERPLIYPM
QADSAYSKSWSAQGLGVEAILLRRQECQASREDAQHLGVDEHAPLIELQTLRKLDGQAVSLIFHRYSARYSDLLADYRGG
SVRQYLAERELPLSRAQSLIGARLPSREEAAWLLMPRHMPALTVLTVSCDAAGLPVELSRSVSRADRFQYQVATPFKTT
>Mature_239_residues
MQLSRQVSPMYHELANILREELTTYQPGDFLPAEFQLAERFSVNRHTIRRAVDELVREGSVLRRQGKGTQVLERPLIYPM
QADSAYSKSWSAQGLGVEAILLRRQECQASREDAQHLGVDEHAPLIELQTLRKLDGQAVSLIFHRYSARYSDLLADYRGG
SVRQYLAERELPLSRAQSLIGARLPSREEAAWLLMPRHMPALTVLTVSCDAAGLPVELSRSVSRADRFQYQVATPFKTT

Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known. By similarity could be a transcriptional regulator [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=230, Percent_Identity=39.5652173913043, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788418, Length=225, Percent_Identity=25.3333333333333, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082252, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27091; Mature: 27091

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSRQVSPMYHELANILREELTTYQPGDFLPAEFQLAERFSVNRHTIRRAVDELVREGS
CCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCH
VLRRQGKGTQVLERPLIYPMQADSAYSKSWSAQGLGVEAILLRRQECQASREDAQHLGVD
HHHHCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
EHAPLIELQTLRKLDGQAVSLIFHRYSARYSDLLADYRGGSVRQYLAERELPLSRAQSLI
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHH
GARLPSREEAAWLLMPRHMPALTVLTVSCDAAGLPVELSRSVSRADRFQYQVATPFKTT
HHCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCCCCCC
>Mature Secondary Structure
MQLSRQVSPMYHELANILREELTTYQPGDFLPAEFQLAERFSVNRHTIRRAVDELVREGS
CCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCH
VLRRQGKGTQVLERPLIYPMQADSAYSKSWSAQGLGVEAILLRRQECQASREDAQHLGVD
HHHHCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
EHAPLIELQTLRKLDGQAVSLIFHRYSARYSDLLADYRGGSVRQYLAERELPLSRAQSLI
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHH
GARLPSREEAAWLLMPRHMPALTVLTVSCDAAGLPVELSRSVSRADRFQYQVATPFKTT
HHCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]