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The map label for this gene is amiR [H]

Identifier: 66045447

GI number: 66045447

Start: 2564725

End: 2565357

Strand: Direct

Name: amiR [H]

Synonym: Psyr_2207

Alternate gene names: 66045447

Gene position: 2564725-2565357 (Clockwise)

Preceding gene: 66045446

Following gene: 66045448

Centisome position: 42.09

GC content: 61.3

Gene sequence:

>633_bases
ATGACCCTGCGTGCCGCCAAGAAACGTTTGCGCAACGACAGCGCAGGCGGCATCAAGGACCTGCGCGATATCAGCGTGCT
GGTGATGCATCCCGATGACGAAGACGGTCGCAACCTGATCGCTCAGTTGCAGCGCATCGGGTGTCAGGTGCGGGTGCAGT
GGCCGATCCCCGAGCGTCTGCACAGCGAGGCTGATGTGATCGTACTGGCGGTATCGCCGGAGAGCCTGTCGACCAATACG
CCCTGGCTGCTGCACCACTCGACGCCACCGATCATTCCGGTGATCGCCTATGAAAACCCGATCATTGTCGAGGCGCTGGT
GCAGCTCAACGCCTGTTCGGTGATTCCGTCGCCAGTCCGCTCGTTCGGCCTGCTGACTGCCCTGGCCATCACCCTCAGTC
AGGCCCGCAAGACGCGGGAACGGGAAAAGCACGTCAAGCGCCTGGAAGGGCGCATGGCGGTGATGCGCACCGTGCAGCAG
GCCAAGATCATCCTGATGGAAACCAAGGGCCTGTCTGAAACGGACGCCTACAACGCGCTGCGTGATCAGGCCATGGCCAA
GCGCGAACCGGTGGAAAAAATCGCCGAGGCGCTGGTCAAGGCTCATGAATTGTTTCAACAAGCCTGTTCCTGA

Upstream 100 bases:

>100_bases
AGTTCGACATCCTTTACGAGAGTCAGAAAGCGCTGAAGCCCGACCCTTATGCGGTGGCGCCTGACTTCAATGGCTGGTCC
AGCCTGACCGGGAGGCGTCC

Downstream 100 bases:

>100_bases
CAGGTTGCAGACAAGCTTCGAGTGTCGGGCGCCACGCCTGATCCTCTTCTGCGCGGAAGGTTGCCATACGCCCTGACCCG
GCAGGTATGGAACACCGCGT

Product: ANTAR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTLRAAKKRLRNDSAGGIKDLRDISVLVMHPDDEDGRNLIAQLQRIGCQVRVQWPIPERLHSEADVIVLAVSPESLSTNT
PWLLHHSTPPIIPVIAYENPIIVEALVQLNACSVIPSPVRSFGLLTALAITLSQARKTREREKHVKRLEGRMAVMRTVQQ
AKIILMETKGLSETDAYNALRDQAMAKREPVEKIAEALVKAHELFQQACS

Sequences:

>Translated_210_residues
MTLRAAKKRLRNDSAGGIKDLRDISVLVMHPDDEDGRNLIAQLQRIGCQVRVQWPIPERLHSEADVIVLAVSPESLSTNT
PWLLHHSTPPIIPVIAYENPIIVEALVQLNACSVIPSPVRSFGLLTALAITLSQARKTREREKHVKRLEGRMAVMRTVQQ
AKIILMETKGLSETDAYNALRDQAMAKREPVEKIAEALVKAHELFQQACS
>Mature_209_residues
TLRAAKKRLRNDSAGGIKDLRDISVLVMHPDDEDGRNLIAQLQRIGCQVRVQWPIPERLHSEADVIVLAVSPESLSTNTP
WLLHHSTPPIIPVIAYENPIIVEALVQLNACSVIPSPVRSFGLLTALAITLSQARKTREREKHVKRLEGRMAVMRTVQQA
KIILMETKGLSETDAYNALRDQAMAKREPVEKIAEALVKAHELFQQACS

Specific function: Positive controlling element of AmiE, the gene for aliphatic amidase. Acts as a transcriptional antitermination factor. It is thought to allow RNA polymerase read through a rho- independent transcription terminator between the AmiE promoter and gene [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ANTAR domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR [H]

EC number: NA

Molecular weight: Translated: 23433; Mature: 23301

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50921 ANTAR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRAAKKRLRNDSAGGIKDLRDISVLVMHPDDEDGRNLIAQLQRIGCQVRVQWPIPERL
CCHHHHHHHHCCCCCCCHHHHHHCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHH
HSEADVIVLAVSPESLSTNTPWLLHHSTPPIIPVIAYENPIIVEALVQLNACSVIPSPVR
CCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHH
SFGLLTALAITLSQARKTREREKHVKRLEGRMAVMRTVQQAKIILMETKGLSETDAYNAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHH
RDQAMAKREPVEKIAEALVKAHELFQQACS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLRAAKKRLRNDSAGGIKDLRDISVLVMHPDDEDGRNLIAQLQRIGCQVRVQWPIPERL
CHHHHHHHHCCCCCCCHHHHHHCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHH
HSEADVIVLAVSPESLSTNTPWLLHHSTPPIIPVIAYENPIIVEALVQLNACSVIPSPVR
CCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHH
SFGLLTALAITLSQARKTREREKHVKRLEGRMAVMRTVQQAKIILMETKGLSETDAYNAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHH
RDQAMAKREPVEKIAEALVKAHELFQQACS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2495988; 10984043; 7539417; 10508151 [H]